Hb_000983_120

Information

Type -
Description -
Location Contig983: 95940-106149
Sequence    

Annotation

kegg
ID rcu:RCOM_1595310
description cyclin-dependent protein kinase, putative
nr
ID XP_002510431.1
description cyclin-dependent protein kinase, putative [Ricinus communis]
swissprot
ID Q2RAC5
description Cyclin-T1-3 OS=Oryza sativa subsp. japonica GN=CYCT1-3 PE=3 SV=2
trembl
ID B9R7Y8
description Cyclin-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_1595310 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64462: 103285-103692 , PASA_asmbl_64464: 102356-102745 , PASA_asmbl_64466: 101426-101626 , PASA_asmbl_64467: 95971-105711 , PASA_asmbl_64468: 96022-105687 , PASA_asmbl_64469: 96022-97246 , PASA_asmbl_64470: 98590-98808
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000983_120 0.0 - - cyclin-dependent protein kinase, putative [Ricinus communis]
2 Hb_039605_010 0.0581990807 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
3 Hb_000042_340 0.0728229822 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
4 Hb_003994_140 0.0779812453 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002928_010 0.0828560358 - - PREDICTED: WD repeat-containing protein DWA2 [Jatropha curcas]
6 Hb_000525_100 0.0832983333 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
7 Hb_027073_030 0.0896721275 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
8 Hb_000125_200 0.090116308 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
9 Hb_000563_330 0.0908012211 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_000139_190 0.0916016106 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
11 Hb_011249_030 0.0921888698 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
12 Hb_009270_040 0.0971409764 - - -
13 Hb_000599_080 0.097863603 - - PREDICTED: TOM1-like protein 1 [Malus domestica]
14 Hb_014361_150 0.0994303798 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
15 Hb_000287_050 0.1016983818 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
16 Hb_010362_030 0.103078938 - - PREDICTED: QWRF motif-containing protein 2 [Jatropha curcas]
17 Hb_001269_200 0.1037542813 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
18 Hb_003581_210 0.1040888123 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic [Jatropha curcas]
19 Hb_000138_130 0.1068658817 - - hypothetical protein JCGZ_25540 [Jatropha curcas]
20 Hb_032202_230 0.1110767477 - - peroxisomal biogenesis factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000983_120 Hb_000983_120 Hb_039605_010 Hb_039605_010 Hb_000983_120--Hb_039605_010 Hb_000042_340 Hb_000042_340 Hb_000983_120--Hb_000042_340 Hb_003994_140 Hb_003994_140 Hb_000983_120--Hb_003994_140 Hb_002928_010 Hb_002928_010 Hb_000983_120--Hb_002928_010 Hb_000525_100 Hb_000525_100 Hb_000983_120--Hb_000525_100 Hb_027073_030 Hb_027073_030 Hb_000983_120--Hb_027073_030 Hb_039605_010--Hb_002928_010 Hb_000287_050 Hb_000287_050 Hb_039605_010--Hb_000287_050 Hb_039605_010--Hb_003994_140 Hb_011249_030 Hb_011249_030 Hb_039605_010--Hb_011249_030 Hb_000563_330 Hb_000563_330 Hb_039605_010--Hb_000563_330 Hb_000599_080 Hb_000599_080 Hb_000042_340--Hb_000599_080 Hb_001652_080 Hb_001652_080 Hb_000042_340--Hb_001652_080 Hb_010362_030 Hb_010362_030 Hb_000042_340--Hb_010362_030 Hb_000042_340--Hb_000525_100 Hb_003292_050 Hb_003292_050 Hb_000042_340--Hb_003292_050 Hb_003994_140--Hb_002928_010 Hb_003994_140--Hb_000563_330 Hb_003994_140--Hb_000525_100 Hb_002042_030 Hb_002042_030 Hb_003994_140--Hb_002042_030 Hb_002928_010--Hb_027073_030 Hb_058972_010 Hb_058972_010 Hb_002928_010--Hb_058972_010 Hb_000414_050 Hb_000414_050 Hb_002928_010--Hb_000414_050 Hb_001418_040 Hb_001418_040 Hb_002928_010--Hb_001418_040 Hb_009270_040 Hb_009270_040 Hb_000525_100--Hb_009270_040 Hb_005288_080 Hb_005288_080 Hb_000525_100--Hb_005288_080 Hb_002615_120 Hb_002615_120 Hb_000525_100--Hb_002615_120 Hb_003096_060 Hb_003096_060 Hb_000525_100--Hb_003096_060 Hb_032202_080 Hb_032202_080 Hb_000525_100--Hb_032202_080 Hb_000679_340 Hb_000679_340 Hb_000525_100--Hb_000679_340 Hb_003579_050 Hb_003579_050 Hb_027073_030--Hb_003579_050 Hb_000139_190 Hb_000139_190 Hb_027073_030--Hb_000139_190 Hb_027073_030--Hb_039605_010 Hb_004128_200 Hb_004128_200 Hb_027073_030--Hb_004128_200 Hb_000576_050 Hb_000576_050 Hb_027073_030--Hb_000576_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.1483 33.8225 57.0423 20.8322 28.9885 37.3629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.6294 15.4419 14.4834 9.55426 15.1002

CAGE analysis