Hb_000983_130

Information

Type -
Description -
Location Contig983: 110406-113335
Sequence    

Annotation

kegg
ID rcu:RCOM_1595300
description transcription factor, putative
nr
ID XP_002510430.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9SFZ3
description Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110 PE=2 SV=2
trembl
ID B9R7Y7
description Transcription factor, putative OS=Ricinus communis GN=RCOM_1595300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64473: 110689-111101
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000983_130 0.0 - - transcription factor, putative [Ricinus communis]
2 Hb_004102_200 0.0605216407 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
3 Hb_004450_090 0.0705330686 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
4 Hb_029238_040 0.0788936755 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
5 Hb_002960_030 0.0790534454 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
6 Hb_152277_010 0.090091521 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
7 Hb_000000_260 0.0928909466 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
8 Hb_007579_030 0.0940362387 - - receptor protein kinase, putative [Ricinus communis]
9 Hb_001366_300 0.096000392 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
10 Hb_029791_010 0.101523268 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
11 Hb_061783_010 0.1078294745 - - PREDICTED: uncharacterized protein LOC105124983 isoform X4 [Populus euphratica]
12 Hb_002043_070 0.1079548531 - - PREDICTED: jacalin-related lectin 19 [Jatropha curcas]
13 Hb_009771_040 0.1096919453 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
14 Hb_002534_070 0.109774541 - - PREDICTED: uncharacterized protein LOC105640545 [Jatropha curcas]
15 Hb_158189_010 0.1116103876 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
16 Hb_001405_170 0.1119477028 - - aspartyl protease family protein [Populus trichocarpa]
17 Hb_002168_070 0.1127556155 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
18 Hb_001541_210 0.1135345173 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
19 Hb_001401_120 0.1187767284 - - hypothetical protein JCGZ_04273 [Jatropha curcas]
20 Hb_002053_190 0.1193345081 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000983_130 Hb_000983_130 Hb_004102_200 Hb_004102_200 Hb_000983_130--Hb_004102_200 Hb_004450_090 Hb_004450_090 Hb_000983_130--Hb_004450_090 Hb_029238_040 Hb_029238_040 Hb_000983_130--Hb_029238_040 Hb_002960_030 Hb_002960_030 Hb_000983_130--Hb_002960_030 Hb_152277_010 Hb_152277_010 Hb_000983_130--Hb_152277_010 Hb_000000_260 Hb_000000_260 Hb_000983_130--Hb_000000_260 Hb_004102_200--Hb_029238_040 Hb_004102_200--Hb_004450_090 Hb_004102_200--Hb_152277_010 Hb_061783_010 Hb_061783_010 Hb_004102_200--Hb_061783_010 Hb_156850_050 Hb_156850_050 Hb_004102_200--Hb_156850_050 Hb_002534_070 Hb_002534_070 Hb_004450_090--Hb_002534_070 Hb_004450_090--Hb_061783_010 Hb_004450_090--Hb_029238_040 Hb_004450_090--Hb_000000_260 Hb_029238_040--Hb_156850_050 Hb_001401_120 Hb_001401_120 Hb_029238_040--Hb_001401_120 Hb_007579_030 Hb_007579_030 Hb_029238_040--Hb_007579_030 Hb_002053_190 Hb_002053_190 Hb_002960_030--Hb_002053_190 Hb_001405_170 Hb_001405_170 Hb_002960_030--Hb_001405_170 Hb_002960_030--Hb_002534_070 Hb_001541_210 Hb_001541_210 Hb_002960_030--Hb_001541_210 Hb_002890_330 Hb_002890_330 Hb_002960_030--Hb_002890_330 Hb_000258_230 Hb_000258_230 Hb_152277_010--Hb_000258_230 Hb_005790_010 Hb_005790_010 Hb_152277_010--Hb_005790_010 Hb_007103_020 Hb_007103_020 Hb_152277_010--Hb_007103_020 Hb_009771_040 Hb_009771_040 Hb_152277_010--Hb_009771_040 Hb_000317_170 Hb_000317_170 Hb_000000_260--Hb_000317_170 Hb_029791_010 Hb_029791_010 Hb_000000_260--Hb_029791_010 Hb_001680_050 Hb_001680_050 Hb_000000_260--Hb_001680_050 Hb_000000_260--Hb_007579_030 Hb_152914_010 Hb_152914_010 Hb_000000_260--Hb_152914_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.60908 1.08821 6.44546 0 0.0126388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.100176 3.25679

CAGE analysis