Hb_000983_150

Information

Type -
Description -
Location Contig983: 119423-123381
Sequence    

Annotation

kegg
ID rcu:RCOM_1595290
description hypothetical protein
nr
ID XP_012071910.1
description PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
swissprot
ID Q9FWS6
description Bifunctional nuclease 1 OS=Arabidopsis thaliana GN=BBD1 PE=2 SV=1
trembl
ID A0A067KQP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04471 PE=4 SV=1
Gene Ontology
ID GO:0004518
description bifunctional nuclease 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64475: 119432-123382
cDNA
(Sanger)
(ID:Location)		 009_C05.ab1: 119432-120753 , 020_J19.ab1: 119432-120782

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000983_150 0.0 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
2 Hb_007904_160 0.0534000355 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
3 Hb_000367_010 0.0582078697 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
4 Hb_100215_010 0.0634157115 - - PREDICTED: heterogeneous nuclear ribonucleoprotein R isoform X1 [Jatropha curcas]
5 Hb_023480_010 0.0642260854 - - cellular nucleic acid binding protein, putative [Ricinus communis]
6 Hb_002131_020 0.0686405186 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
7 Hb_000008_290 0.0709656776 - - PREDICTED: protein SAND [Jatropha curcas]
8 Hb_003680_150 0.0724948593 - - srpk, putative [Ricinus communis]
9 Hb_003362_070 0.0734469563 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
10 Hb_000071_030 0.0734807543 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
11 Hb_001617_060 0.0741337795 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
12 Hb_004935_030 0.0748279852 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
13 Hb_000109_210 0.0761460741 - - PREDICTED: threonine--tRNA ligase, mitochondrial [Jatropha curcas]
14 Hb_006831_110 0.0775272813 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
15 Hb_123903_010 0.0779681821 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
16 Hb_000470_070 0.0787073058 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
17 Hb_005321_020 0.0794758614 - - splicing factor-related family protein [Populus trichocarpa]
18 Hb_001496_070 0.0813057432 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
19 Hb_000347_180 0.0815932584 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
20 Hb_000457_260 0.0824466279 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000983_150 Hb_000983_150 Hb_007904_160 Hb_007904_160 Hb_000983_150--Hb_007904_160 Hb_000367_010 Hb_000367_010 Hb_000983_150--Hb_000367_010 Hb_100215_010 Hb_100215_010 Hb_000983_150--Hb_100215_010 Hb_023480_010 Hb_023480_010 Hb_000983_150--Hb_023480_010 Hb_002131_020 Hb_002131_020 Hb_000983_150--Hb_002131_020 Hb_000008_290 Hb_000008_290 Hb_000983_150--Hb_000008_290 Hb_007904_160--Hb_000367_010 Hb_000109_210 Hb_000109_210 Hb_007904_160--Hb_000109_210 Hb_000212_310 Hb_000212_310 Hb_007904_160--Hb_000212_310 Hb_143629_110 Hb_143629_110 Hb_007904_160--Hb_143629_110 Hb_000083_250 Hb_000083_250 Hb_007904_160--Hb_000083_250 Hb_003680_150 Hb_003680_150 Hb_000367_010--Hb_003680_150 Hb_000367_010--Hb_023480_010 Hb_000700_140 Hb_000700_140 Hb_000367_010--Hb_000700_140 Hb_001617_060 Hb_001617_060 Hb_000367_010--Hb_001617_060 Hb_000300_440 Hb_000300_440 Hb_100215_010--Hb_000300_440 Hb_004689_050 Hb_004689_050 Hb_100215_010--Hb_004689_050 Hb_003362_070 Hb_003362_070 Hb_100215_010--Hb_003362_070 Hb_000023_190 Hb_000023_190 Hb_100215_010--Hb_000023_190 Hb_000343_030 Hb_000343_030 Hb_100215_010--Hb_000343_030 Hb_023480_010--Hb_003680_150 Hb_000544_090 Hb_000544_090 Hb_023480_010--Hb_000544_090 Hb_002684_040 Hb_002684_040 Hb_023480_010--Hb_002684_040 Hb_003025_110 Hb_003025_110 Hb_023480_010--Hb_003025_110 Hb_000853_230 Hb_000853_230 Hb_023480_010--Hb_000853_230 Hb_001680_010 Hb_001680_010 Hb_002131_020--Hb_001680_010 Hb_005993_020 Hb_005993_020 Hb_002131_020--Hb_005993_020 Hb_002835_370 Hb_002835_370 Hb_002131_020--Hb_002835_370 Hb_010931_120 Hb_010931_120 Hb_002131_020--Hb_010931_120 Hb_009627_010 Hb_009627_010 Hb_002131_020--Hb_009627_010 Hb_002815_030 Hb_002815_030 Hb_000008_290--Hb_002815_030 Hb_000592_030 Hb_000592_030 Hb_000008_290--Hb_000592_030 Hb_000890_060 Hb_000890_060 Hb_000008_290--Hb_000890_060 Hb_000613_050 Hb_000613_050 Hb_000008_290--Hb_000613_050 Hb_000617_180 Hb_000617_180 Hb_000008_290--Hb_000617_180 Hb_123903_010 Hb_123903_010 Hb_000008_290--Hb_123903_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.7525 20.907 15.8296 23.744 29.2544 38.6797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8525 13.9776 25.0788 28.8547 21.4748

CAGE analysis