Hb_000983_200

Information

Type -
Description -
Location Contig983: 175128-176135
Sequence    

Annotation

kegg
ID rcu:RCOM_1595220
description hypothetical protein
nr
ID XP_012072011.1
description PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04466 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000983_200 0.0 - - PREDICTED: uncharacterized protein LOC105633924 [Jatropha curcas]
2 Hb_000629_110 0.0613355713 - - PREDICTED: protein RTF2 homolog [Jatropha curcas]
3 Hb_000815_120 0.0761559913 - - calcium ion binding protein, putative [Ricinus communis]
4 Hb_003093_050 0.077597367 - - PREDICTED: uncharacterized protein LOC105641023 isoform X2 [Jatropha curcas]
5 Hb_004143_080 0.0784320437 - - PREDICTED: protein ECERIFERUM 1 [Jatropha curcas]
6 Hb_004818_010 0.0789092339 - - hypothetical protein JCGZ_13628 [Jatropha curcas]
7 Hb_005736_030 0.0824105212 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
8 Hb_001951_050 0.0826774958 - - chlorophyll A/B binding protein, putative [Ricinus communis]
9 Hb_004807_040 0.0843224031 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
10 Hb_004920_080 0.0844321708 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
11 Hb_000704_020 0.0848312366 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001775_010 0.0892980607 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004712_230 0.0907462305 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
14 Hb_001080_290 0.0913976653 - - PSI reaction center subunit II [Citrus sinensis]
15 Hb_000608_160 0.0922066659 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
16 Hb_010021_040 0.0927569761 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
17 Hb_029622_060 0.0953695888 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
18 Hb_001289_050 0.0972496286 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
19 Hb_101097_010 0.0980111049 - - polyprotein [Citrus endogenous pararetrovirus]
20 Hb_000530_060 0.0987607354 - - -

Gene co-expression network

sample Hb_000983_200 Hb_000983_200 Hb_000629_110 Hb_000629_110 Hb_000983_200--Hb_000629_110 Hb_000815_120 Hb_000815_120 Hb_000983_200--Hb_000815_120 Hb_003093_050 Hb_003093_050 Hb_000983_200--Hb_003093_050 Hb_004143_080 Hb_004143_080 Hb_000983_200--Hb_004143_080 Hb_004818_010 Hb_004818_010 Hb_000983_200--Hb_004818_010 Hb_005736_030 Hb_005736_030 Hb_000983_200--Hb_005736_030 Hb_000629_110--Hb_003093_050 Hb_000629_110--Hb_004818_010 Hb_000629_110--Hb_004143_080 Hb_000704_020 Hb_000704_020 Hb_000629_110--Hb_000704_020 Hb_000629_110--Hb_005736_030 Hb_000815_120--Hb_004143_080 Hb_000815_120--Hb_004818_010 Hb_000815_120--Hb_000704_020 Hb_001951_050 Hb_001951_050 Hb_000815_120--Hb_001951_050 Hb_002301_070 Hb_002301_070 Hb_000815_120--Hb_002301_070 Hb_000815_120--Hb_003093_050 Hb_003093_050--Hb_004818_010 Hb_029584_020 Hb_029584_020 Hb_003093_050--Hb_029584_020 Hb_003093_050--Hb_004143_080 Hb_000530_060 Hb_000530_060 Hb_003093_050--Hb_000530_060 Hb_003093_050--Hb_000704_020 Hb_004143_080--Hb_004818_010 Hb_004143_080--Hb_002301_070 Hb_004143_080--Hb_000704_020 Hb_004143_080--Hb_001951_050 Hb_004818_010--Hb_000704_020 Hb_004818_010--Hb_029584_020 Hb_004818_010--Hb_000530_060 Hb_000029_150 Hb_000029_150 Hb_005736_030--Hb_000029_150 Hb_020805_090 Hb_020805_090 Hb_005736_030--Hb_020805_090 Hb_004712_230 Hb_004712_230 Hb_005736_030--Hb_004712_230 Hb_004631_020 Hb_004631_020 Hb_005736_030--Hb_004631_020 Hb_004807_040 Hb_004807_040 Hb_005736_030--Hb_004807_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0950115 0.977954 0.912063 0.0410737 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0158671 6.05843

CAGE analysis