Hb_000984_050

Information

Type -
Description -
Location Contig984: 81510-96430
Sequence    

Annotation

kegg
ID rcu:RCOM_1584370
description sucrose transport protein, putative
nr
ID ABK60189.1
description sucrose transporter 5 [Hevea brasiliensis]
swissprot
ID Q9FE59
description Sucrose transport protein SUC4 OS=Arabidopsis thaliana GN=SUC4 PE=1 SV=2
trembl
ID A0T058
description Sucrose transporter 5 OS=Hevea brasiliensis GN=SUT5 PE=2 SV=1
Gene Ontology
ID GO:0005773
description sucrose transport protein suc4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64533: 82789-83493
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000984_050 0.0 - - sucrose transporter 5 [Hevea brasiliensis]
2 Hb_000926_120 0.1288550401 - - PREDICTED: aspartic proteinase A1-like [Jatropha curcas]
3 Hb_000181_250 0.1426218983 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
4 Hb_000115_310 0.1435633253 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]
5 Hb_011218_080 0.1489662604 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
6 Hb_000027_030 0.1506605226 - - Uncharacterized protein isoform 1 [Theobroma cacao]
7 Hb_001247_200 0.1523731388 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
8 Hb_002217_150 0.1544374343 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
9 Hb_042487_010 0.155871202 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]
10 Hb_011861_070 0.1559126809 - - F-box/LRR-repeat protein, putative [Ricinus communis]
11 Hb_004608_020 0.1573584579 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
12 Hb_001433_190 0.1575476192 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
13 Hb_001140_250 0.1578433092 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
14 Hb_006816_410 0.1579144455 - - PREDICTED: eukaryotic translation initiation factor 3 subunit A [Jatropha curcas]
15 Hb_005205_020 0.1581020741 - - PREDICTED: protein FAM135B-like isoform X2 [Jatropha curcas]
16 Hb_015763_020 0.15820496 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
17 Hb_000342_090 0.1588117003 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
18 Hb_010080_060 0.1588181224 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_007101_180 0.159072921 - - PREDICTED: DNA polymerase beta [Jatropha curcas]
20 Hb_000023_060 0.1593304078 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]

Gene co-expression network

sample Hb_000984_050 Hb_000984_050 Hb_000926_120 Hb_000926_120 Hb_000984_050--Hb_000926_120 Hb_000181_250 Hb_000181_250 Hb_000984_050--Hb_000181_250 Hb_000115_310 Hb_000115_310 Hb_000984_050--Hb_000115_310 Hb_011218_080 Hb_011218_080 Hb_000984_050--Hb_011218_080 Hb_000027_030 Hb_000027_030 Hb_000984_050--Hb_000027_030 Hb_001247_200 Hb_001247_200 Hb_000984_050--Hb_001247_200 Hb_005295_040 Hb_005295_040 Hb_000926_120--Hb_005295_040 Hb_005635_010 Hb_005635_010 Hb_000926_120--Hb_005635_010 Hb_000136_150 Hb_000136_150 Hb_000926_120--Hb_000136_150 Hb_031754_010 Hb_031754_010 Hb_000926_120--Hb_031754_010 Hb_001433_190 Hb_001433_190 Hb_000926_120--Hb_001433_190 Hb_000631_150 Hb_000631_150 Hb_000926_120--Hb_000631_150 Hb_004970_160 Hb_004970_160 Hb_000181_250--Hb_004970_160 Hb_004974_010 Hb_004974_010 Hb_000181_250--Hb_004974_010 Hb_001541_080 Hb_001541_080 Hb_000181_250--Hb_001541_080 Hb_001221_150 Hb_001221_150 Hb_000181_250--Hb_001221_150 Hb_001028_070 Hb_001028_070 Hb_000181_250--Hb_001028_070 Hb_001621_130 Hb_001621_130 Hb_000181_250--Hb_001621_130 Hb_039894_010 Hb_039894_010 Hb_000115_310--Hb_039894_010 Hb_001140_250 Hb_001140_250 Hb_000115_310--Hb_001140_250 Hb_004586_180 Hb_004586_180 Hb_000115_310--Hb_004586_180 Hb_003747_010 Hb_003747_010 Hb_000115_310--Hb_003747_010 Hb_005122_080 Hb_005122_080 Hb_000115_310--Hb_005122_080 Hb_000029_160 Hb_000029_160 Hb_000115_310--Hb_000029_160 Hb_002820_040 Hb_002820_040 Hb_011218_080--Hb_002820_040 Hb_007416_310 Hb_007416_310 Hb_011218_080--Hb_007416_310 Hb_004608_020 Hb_004608_020 Hb_011218_080--Hb_004608_020 Hb_114310_040 Hb_114310_040 Hb_011218_080--Hb_114310_040 Hb_002675_060 Hb_002675_060 Hb_011218_080--Hb_002675_060 Hb_002725_070 Hb_002725_070 Hb_011218_080--Hb_002725_070 Hb_001675_070 Hb_001675_070 Hb_000027_030--Hb_001675_070 Hb_022250_110 Hb_022250_110 Hb_000027_030--Hb_022250_110 Hb_000213_070 Hb_000213_070 Hb_000027_030--Hb_000213_070 Hb_001976_090 Hb_001976_090 Hb_000027_030--Hb_001976_090 Hb_000108_080 Hb_000108_080 Hb_000027_030--Hb_000108_080 Hb_000209_070 Hb_000209_070 Hb_000027_030--Hb_000209_070 Hb_000384_030 Hb_000384_030 Hb_001247_200--Hb_000384_030 Hb_006816_170 Hb_006816_170 Hb_001247_200--Hb_006816_170 Hb_001247_200--Hb_000926_120 Hb_001152_030 Hb_001152_030 Hb_001247_200--Hb_001152_030 Hb_058643_010 Hb_058643_010 Hb_001247_200--Hb_058643_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9257 10.6166 1.28407 6.89749 28.0093 26.2153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.092 2.08976 8.9511 25.3586 3.168

CAGE analysis