Hb_000984_150

Information

Type -
Description -
Location Contig984: 203953-212212
Sequence    

Annotation

kegg
ID rcu:RCOM_1584740
description hypothetical protein
nr
ID XP_002510012.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5RA75
description Protein FAM135A OS=Pongo abelii GN=FAM135A PE=2 SV=1
trembl
ID B9R6R9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1584740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64557: 206542-207064 , PASA_asmbl_64558: 209129-210670 , PASA_asmbl_64559: 212166-213163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000984_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000322_030 0.1154749097 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
3 Hb_001369_010 0.1277049131 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
4 Hb_000417_050 0.1288766345 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
5 Hb_001677_040 0.135917719 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
6 Hb_001544_050 0.1362795797 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
7 Hb_008179_030 0.1363255141 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 8 [Jatropha curcas]
8 Hb_001195_660 0.1388865632 - - metalloendopeptidase, putative [Ricinus communis]
9 Hb_000130_130 0.1400085005 - - hypothetical protein POPTR_0001s40330g [Populus trichocarpa]
10 Hb_000390_210 0.1462010012 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_000099_170 0.1473352095 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
12 Hb_003462_040 0.1513998687 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
13 Hb_000388_080 0.1516548941 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
14 Hb_001433_150 0.1521489303 - - conserved hypothetical protein [Ricinus communis]
15 Hb_119044_010 0.1523124248 - - PREDICTED: stomatal closure-related actin-binding protein 2-like [Jatropha curcas]
16 Hb_005488_130 0.1539796618 - - transporter, putative [Ricinus communis]
17 Hb_004994_330 0.1577368646 - - DNA binding protein, putative [Ricinus communis]
18 Hb_000328_010 0.1588005605 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
19 Hb_017098_040 0.1591675834 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
20 Hb_001180_010 0.1617440009 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000984_150 Hb_000984_150 Hb_000322_030 Hb_000322_030 Hb_000984_150--Hb_000322_030 Hb_001369_010 Hb_001369_010 Hb_000984_150--Hb_001369_010 Hb_000417_050 Hb_000417_050 Hb_000984_150--Hb_000417_050 Hb_001677_040 Hb_001677_040 Hb_000984_150--Hb_001677_040 Hb_001544_050 Hb_001544_050 Hb_000984_150--Hb_001544_050 Hb_008179_030 Hb_008179_030 Hb_000984_150--Hb_008179_030 Hb_000181_330 Hb_000181_330 Hb_000322_030--Hb_000181_330 Hb_000099_170 Hb_000099_170 Hb_000322_030--Hb_000099_170 Hb_000390_210 Hb_000390_210 Hb_000322_030--Hb_000390_210 Hb_000388_080 Hb_000388_080 Hb_000322_030--Hb_000388_080 Hb_000958_120 Hb_000958_120 Hb_000322_030--Hb_000958_120 Hb_000227_400 Hb_000227_400 Hb_000322_030--Hb_000227_400 Hb_003462_040 Hb_003462_040 Hb_001369_010--Hb_003462_040 Hb_003226_250 Hb_003226_250 Hb_001369_010--Hb_003226_250 Hb_000808_150 Hb_000808_150 Hb_001369_010--Hb_000808_150 Hb_001195_660 Hb_001195_660 Hb_001369_010--Hb_001195_660 Hb_006750_010 Hb_006750_010 Hb_001369_010--Hb_006750_010 Hb_000749_020 Hb_000749_020 Hb_001369_010--Hb_000749_020 Hb_004994_330 Hb_004994_330 Hb_000417_050--Hb_004994_330 Hb_002078_390 Hb_002078_390 Hb_000417_050--Hb_002078_390 Hb_002662_110 Hb_002662_110 Hb_000417_050--Hb_002662_110 Hb_000417_050--Hb_001677_040 Hb_000622_050 Hb_000622_050 Hb_000417_050--Hb_000622_050 Hb_001357_050 Hb_001357_050 Hb_000417_050--Hb_001357_050 Hb_001677_040--Hb_001195_660 Hb_000333_030 Hb_000333_030 Hb_001677_040--Hb_000333_030 Hb_001677_040--Hb_002662_110 Hb_002675_080 Hb_002675_080 Hb_001677_040--Hb_002675_080 Hb_001053_020 Hb_001053_020 Hb_001677_040--Hb_001053_020 Hb_001180_010 Hb_001180_010 Hb_001544_050--Hb_001180_010 Hb_001544_050--Hb_000390_210 Hb_000465_410 Hb_000465_410 Hb_001544_050--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_001544_050--Hb_002701_070 Hb_000749_260 Hb_000749_260 Hb_001544_050--Hb_000749_260 Hb_001544_050--Hb_004994_330 Hb_008179_030--Hb_000390_210 Hb_008179_030--Hb_000322_030 Hb_000140_060 Hb_000140_060 Hb_008179_030--Hb_000140_060 Hb_008179_030--Hb_000099_170 Hb_003664_030 Hb_003664_030 Hb_008179_030--Hb_003664_030 Hb_000069_360 Hb_000069_360 Hb_008179_030--Hb_000069_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0610308 0.71081 2.14308 2.54955 0.228466 0.0593675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.111176 0.116642 0.305466 0.121627 2.26012

CAGE analysis