Hb_000984_190

Information

Type -
Description -
Location Contig984: 233917-237263
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64569: 231834-233699 , PASA_asmbl_64570: 234550-234681 , PASA_asmbl_64571: 237056-237259
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000984_190 0.0 - - -
2 Hb_001235_070 0.0894737424 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005941_010 0.09286436 - - PREDICTED: protein SAND [Jatropha curcas]
4 Hb_003453_010 0.0935113501 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001437_040 0.098228883 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
6 Hb_017895_050 0.1015654879 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
7 Hb_003086_020 0.101730524 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
8 Hb_000705_260 0.1027796677 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003086_110 0.1042827848 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
10 Hb_003398_060 0.1059568453 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_025246_010 0.1070369488 - - -
12 Hb_001369_050 0.1077391739 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
13 Hb_007101_100 0.1078685144 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
14 Hb_004242_100 0.1088613882 - - RNA binding protein, putative [Ricinus communis]
15 Hb_000152_140 0.1102702744 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
16 Hb_027892_060 0.1110653387 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
17 Hb_000963_190 0.1156332096 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
18 Hb_098709_010 0.1161302694 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
19 Hb_000479_180 0.1173945315 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002263_010 0.1189598764 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]

Gene co-expression network

sample Hb_000984_190 Hb_000984_190 Hb_001235_070 Hb_001235_070 Hb_000984_190--Hb_001235_070 Hb_005941_010 Hb_005941_010 Hb_000984_190--Hb_005941_010 Hb_003453_010 Hb_003453_010 Hb_000984_190--Hb_003453_010 Hb_001437_040 Hb_001437_040 Hb_000984_190--Hb_001437_040 Hb_017895_050 Hb_017895_050 Hb_000984_190--Hb_017895_050 Hb_003086_020 Hb_003086_020 Hb_000984_190--Hb_003086_020 Hb_005686_110 Hb_005686_110 Hb_001235_070--Hb_005686_110 Hb_001369_050 Hb_001369_050 Hb_001235_070--Hb_001369_050 Hb_000371_080 Hb_000371_080 Hb_001235_070--Hb_000371_080 Hb_148209_120 Hb_148209_120 Hb_001235_070--Hb_148209_120 Hb_005398_030 Hb_005398_030 Hb_001235_070--Hb_005398_030 Hb_004595_020 Hb_004595_020 Hb_001235_070--Hb_004595_020 Hb_000152_140 Hb_000152_140 Hb_005941_010--Hb_000152_140 Hb_005245_090 Hb_005245_090 Hb_005941_010--Hb_005245_090 Hb_004242_100 Hb_004242_100 Hb_005941_010--Hb_004242_100 Hb_003050_040 Hb_003050_040 Hb_005941_010--Hb_003050_040 Hb_000696_110 Hb_000696_110 Hb_005941_010--Hb_000696_110 Hb_003453_010--Hb_017895_050 Hb_003453_010--Hb_001437_040 Hb_002518_250 Hb_002518_250 Hb_003453_010--Hb_002518_250 Hb_027892_060 Hb_027892_060 Hb_003453_010--Hb_027892_060 Hb_098709_010 Hb_098709_010 Hb_003453_010--Hb_098709_010 Hb_006569_020 Hb_006569_020 Hb_001437_040--Hb_006569_020 Hb_001437_040--Hb_098709_010 Hb_007166_050 Hb_007166_050 Hb_001437_040--Hb_007166_050 Hb_118977_020 Hb_118977_020 Hb_001437_040--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_001437_040--Hb_003086_110 Hb_017895_050--Hb_027892_060 Hb_017895_050--Hb_001437_040 Hb_004204_030 Hb_004204_030 Hb_017895_050--Hb_004204_030 Hb_017895_050--Hb_098709_010 Hb_003911_040 Hb_003911_040 Hb_017895_050--Hb_003911_040 Hb_003086_020--Hb_003086_110 Hb_003086_020--Hb_000152_140 Hb_133271_020 Hb_133271_020 Hb_003086_020--Hb_133271_020 Hb_000272_100 Hb_000272_100 Hb_003086_020--Hb_000272_100 Hb_004662_030 Hb_004662_030 Hb_003086_020--Hb_004662_030 Hb_157854_010 Hb_157854_010 Hb_003086_020--Hb_157854_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.43003 1.76415 0.657729 1.01207 6.92234 13.8604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8824 8.81064 5.97598 2.77995 2.20361

CAGE analysis