Hb_000984_240

Information

Type -
Description -
Location Contig984: 268748-269116
Sequence    

Annotation

kegg
ID pop:POPTR_0002s11310g
description POPTRDRAFT_709829; plastid-specific ribosomal family protein
nr
ID KDP41555.1
description hypothetical protein JCGZ_15962 [Jatropha curcas]
swissprot
ID Q9FKP0
description 50S ribosomal protein 6, chloroplastic OS=Arabidopsis thaliana GN=PSRP6 PE=3 SV=1
trembl
ID A0A067LAL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15962 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64577: 268474-269215
cDNA
(Sanger)
(ID:Location)		 008_C04.ab1: 268471-269159 , 020_G21.ab1: 268622-269184 , 023_D08.ab1: 268622-269159 , 031_E17.ab1: 268561-269199 , 041_C07.ab1: 268586-269159

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000984_240 0.0 - - hypothetical protein JCGZ_15962 [Jatropha curcas]
2 Hb_001790_030 0.1169664607 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Jatropha curcas]
3 Hb_000167_050 0.1190721355 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
4 Hb_000120_770 0.1258471599 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000254_140 0.1343574403 - - PREDICTED: 30S ribosomal protein S17, chloroplastic [Jatropha curcas]
6 Hb_000394_180 0.1371960533 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
7 Hb_003349_030 0.1417721948 - - PREDICTED: uncharacterized protein LOC105628283 [Jatropha curcas]
8 Hb_001369_790 0.1457603259 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
9 Hb_000105_120 0.1461662071 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
10 Hb_000723_290 0.1475214987 - - calcium lipid binding protein, putative [Ricinus communis]
11 Hb_009780_050 0.1486396632 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
12 Hb_007534_050 0.1523589045 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_001789_200 0.1530101852 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
14 Hb_003813_020 0.1564817685 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
15 Hb_000176_010 0.1567844623 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
16 Hb_002477_010 0.1580310267 - - conserved hypothetical protein [Ricinus communis]
17 Hb_083380_020 0.1581218607 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
18 Hb_008147_090 0.1600136797 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000392_550 0.1610162914 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_021079_010 0.1617547586 - - PREDICTED: histone H2B-like [Populus euphratica]

Gene co-expression network

sample Hb_000984_240 Hb_000984_240 Hb_001790_030 Hb_001790_030 Hb_000984_240--Hb_001790_030 Hb_000167_050 Hb_000167_050 Hb_000984_240--Hb_000167_050 Hb_000120_770 Hb_000120_770 Hb_000984_240--Hb_000120_770 Hb_000254_140 Hb_000254_140 Hb_000984_240--Hb_000254_140 Hb_000394_180 Hb_000394_180 Hb_000984_240--Hb_000394_180 Hb_003349_030 Hb_003349_030 Hb_000984_240--Hb_003349_030 Hb_003813_020 Hb_003813_020 Hb_001790_030--Hb_003813_020 Hb_001790_030--Hb_003349_030 Hb_005846_030 Hb_005846_030 Hb_001790_030--Hb_005846_030 Hb_001712_020 Hb_001712_020 Hb_001790_030--Hb_001712_020 Hb_001790_030--Hb_000254_140 Hb_000638_160 Hb_000638_160 Hb_000167_050--Hb_000638_160 Hb_000167_050--Hb_000394_180 Hb_000723_290 Hb_000723_290 Hb_000167_050--Hb_000723_290 Hb_009780_050 Hb_009780_050 Hb_000167_050--Hb_009780_050 Hb_000167_050--Hb_005846_030 Hb_000176_010 Hb_000176_010 Hb_000167_050--Hb_000176_010 Hb_001242_080 Hb_001242_080 Hb_000120_770--Hb_001242_080 Hb_001575_060 Hb_001575_060 Hb_000120_770--Hb_001575_060 Hb_002876_020 Hb_002876_020 Hb_000120_770--Hb_002876_020 Hb_001865_090 Hb_001865_090 Hb_000120_770--Hb_001865_090 Hb_003106_100 Hb_003106_100 Hb_000120_770--Hb_003106_100 Hb_004257_010 Hb_004257_010 Hb_000120_770--Hb_004257_010 Hb_004109_160 Hb_004109_160 Hb_000254_140--Hb_004109_160 Hb_000254_140--Hb_000723_290 Hb_007632_170 Hb_007632_170 Hb_000254_140--Hb_007632_170 Hb_020378_060 Hb_020378_060 Hb_000254_140--Hb_020378_060 Hb_004951_060 Hb_004951_060 Hb_000394_180--Hb_004951_060 Hb_007192_030 Hb_007192_030 Hb_000394_180--Hb_007192_030 Hb_001369_790 Hb_001369_790 Hb_000394_180--Hb_001369_790 Hb_001301_340 Hb_001301_340 Hb_000394_180--Hb_001301_340 Hb_006846_150 Hb_006846_150 Hb_000394_180--Hb_006846_150 Hb_000394_180--Hb_004257_010 Hb_000877_080 Hb_000877_080 Hb_003349_030--Hb_000877_080 Hb_000056_070 Hb_000056_070 Hb_003349_030--Hb_000056_070 Hb_003050_250 Hb_003050_250 Hb_003349_030--Hb_003050_250 Hb_003349_030--Hb_001712_020 Hb_001019_150 Hb_001019_150 Hb_003349_030--Hb_001019_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.764 15.7349 183.176 253.507 21.3361 137.005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
159.283 252.12 90.1623 69.1364 293.816

CAGE analysis