Hb_000984_280

Information

Type -
Description -
Location Contig984: 287931-288531
Sequence    

Annotation

kegg
ID rcu:RCOM_1584940
description hypothetical protein
nr
ID XP_012068136.1
description PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
swissprot
ID Q9T068
description EPIDERMAL PATTERNING FACTOR-like protein 2 OS=Arabidopsis thaliana GN=EPFL2 PE=2 SV=1
trembl
ID B9R6S9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1584940 PE=4 SV=1
Gene Ontology
ID GO:0010052
description epidermal patterning factor-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64587: 288115-288567 , PASA_asmbl_64588: 288155-288334
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000984_280 0.0 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
2 Hb_001242_170 0.0240779509 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000732_200 0.0329603314 - - conserved hypothetical protein [Ricinus communis]
4 Hb_085600_010 0.034322119 - - PREDICTED: peroxidase 24-like [Jatropha curcas]
5 Hb_180864_010 0.0429251557 - - hypothetical protein B456_010G097000 [Gossypium raimondii]
6 Hb_000504_060 0.0453595553 - - Cell division cycle protein cdt2, putative [Ricinus communis]
7 Hb_000617_160 0.0480571517 - - -
8 Hb_138585_070 0.0548731068 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002217_400 0.0597760899 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
10 Hb_000028_450 0.0676705774 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
11 Hb_003082_090 0.072561526 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
12 Hb_005357_040 0.0735071862 - - gibberellin 20-oxidase, putative [Ricinus communis]
13 Hb_002759_200 0.0827962631 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
14 Hb_002025_280 0.0927495333 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
15 Hb_002766_070 0.0935735398 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
16 Hb_004598_020 0.0969666598 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
17 Hb_005389_030 0.0970186172 - - hypothetical protein VITISV_023348 [Vitis vinifera]
18 Hb_000531_010 0.1050443374 transcription factor TF Family: G2-like hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
19 Hb_005551_070 0.1188028434 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
20 Hb_005305_170 0.1227466056 - - PREDICTED: probable beta-1,3-galactosyltransferase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000984_280 Hb_000984_280 Hb_001242_170 Hb_001242_170 Hb_000984_280--Hb_001242_170 Hb_000732_200 Hb_000732_200 Hb_000984_280--Hb_000732_200 Hb_085600_010 Hb_085600_010 Hb_000984_280--Hb_085600_010 Hb_180864_010 Hb_180864_010 Hb_000984_280--Hb_180864_010 Hb_000504_060 Hb_000504_060 Hb_000984_280--Hb_000504_060 Hb_000617_160 Hb_000617_160 Hb_000984_280--Hb_000617_160 Hb_001242_170--Hb_085600_010 Hb_001242_170--Hb_180864_010 Hb_001242_170--Hb_000732_200 Hb_001242_170--Hb_000504_060 Hb_001242_170--Hb_000617_160 Hb_000732_200--Hb_000617_160 Hb_138585_070 Hb_138585_070 Hb_000732_200--Hb_138585_070 Hb_002217_400 Hb_002217_400 Hb_000732_200--Hb_002217_400 Hb_005357_040 Hb_005357_040 Hb_000732_200--Hb_005357_040 Hb_000028_450 Hb_000028_450 Hb_000732_200--Hb_000028_450 Hb_085600_010--Hb_180864_010 Hb_085600_010--Hb_000504_060 Hb_002025_280 Hb_002025_280 Hb_085600_010--Hb_002025_280 Hb_002766_070 Hb_002766_070 Hb_085600_010--Hb_002766_070 Hb_180864_010--Hb_000732_200 Hb_004598_020 Hb_004598_020 Hb_180864_010--Hb_004598_020 Hb_003082_090 Hb_003082_090 Hb_180864_010--Hb_003082_090 Hb_002759_200 Hb_002759_200 Hb_000504_060--Hb_002759_200 Hb_000504_060--Hb_000732_200 Hb_000504_060--Hb_000617_160 Hb_000617_160--Hb_138585_070 Hb_000617_160--Hb_005357_040 Hb_000617_160--Hb_002217_400 Hb_000617_160--Hb_000028_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.840536 1.4536 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.321725 0

CAGE analysis