Hb_000987_030

Information

Type transcription factor
Description TF Family: BES1
Location Contig987: 10925-11668
Sequence    

Annotation

kegg
ID pop:POPTR_0016s13350g
description POPTRDRAFT_777919; hypothetical protein
nr
ID XP_002323613.1
description hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
swissprot
ID Q5Z9E5
description Protein BZR1 homolog 3 OS=Oryza sativa subsp. japonica GN=BZR3 PE=2 SV=1
trembl
ID B9IGH5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s13350g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000987_030 0.0 transcription factor TF Family: BES1 hypothetical protein POPTR_0016s13350g [Populus trichocarpa]
2 Hb_005743_050 0.027612739 - - unnamed protein product [Coffea canephora]
3 Hb_000251_150 0.0281547782 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
4 Hb_158001_010 0.0373666665 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
5 Hb_001049_130 0.0410054448 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
6 Hb_000979_120 0.0452380603 - - Pectinesterase-1 precursor, putative [Ricinus communis]
7 Hb_031862_220 0.0462283376 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
8 Hb_001053_070 0.0463046002 desease resistance Gene Name: NB-ARC hypothetical protein EUGRSUZ_B02976 [Eucalyptus grandis]
9 Hb_029879_020 0.0478818629 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
10 Hb_007317_030 0.0479243043 - - -
11 Hb_000139_170 0.0489132126 - - PREDICTED: uncharacterized protein LOC105631957 [Jatropha curcas]
12 Hb_001936_100 0.0522360275 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000046_400 0.0533988541 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001295_070 0.0558324903 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
15 Hb_000179_010 0.0559382251 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
16 Hb_004452_070 0.0579981495 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
17 Hb_001775_020 0.0581152427 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
18 Hb_000373_210 0.0647272735 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
19 Hb_000703_340 0.0654942145 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
20 Hb_000844_080 0.0678605057 transcription factor TF Family: G2-like hypothetical protein RCOM_1592640 [Ricinus communis]

Gene co-expression network

sample Hb_000987_030 Hb_000987_030 Hb_005743_050 Hb_005743_050 Hb_000987_030--Hb_005743_050 Hb_000251_150 Hb_000251_150 Hb_000987_030--Hb_000251_150 Hb_158001_010 Hb_158001_010 Hb_000987_030--Hb_158001_010 Hb_001049_130 Hb_001049_130 Hb_000987_030--Hb_001049_130 Hb_000979_120 Hb_000979_120 Hb_000987_030--Hb_000979_120 Hb_031862_220 Hb_031862_220 Hb_000987_030--Hb_031862_220 Hb_000139_170 Hb_000139_170 Hb_005743_050--Hb_000139_170 Hb_001775_020 Hb_001775_020 Hb_005743_050--Hb_001775_020 Hb_001295_070 Hb_001295_070 Hb_005743_050--Hb_001295_070 Hb_005743_050--Hb_158001_010 Hb_005743_050--Hb_000251_150 Hb_000046_400 Hb_000046_400 Hb_000251_150--Hb_000046_400 Hb_029879_020 Hb_029879_020 Hb_000251_150--Hb_029879_020 Hb_000179_010 Hb_000179_010 Hb_000251_150--Hb_000179_010 Hb_004452_070 Hb_004452_070 Hb_000251_150--Hb_004452_070 Hb_085682_010 Hb_085682_010 Hb_158001_010--Hb_085682_010 Hb_158001_010--Hb_001295_070 Hb_158001_010--Hb_000179_010 Hb_001507_060 Hb_001507_060 Hb_158001_010--Hb_001507_060 Hb_001053_070 Hb_001053_070 Hb_001049_130--Hb_001053_070 Hb_001049_130--Hb_031862_220 Hb_000373_210 Hb_000373_210 Hb_001049_130--Hb_000373_210 Hb_001936_100 Hb_001936_100 Hb_001049_130--Hb_001936_100 Hb_002400_200 Hb_002400_200 Hb_001049_130--Hb_002400_200 Hb_000979_120--Hb_000251_150 Hb_000979_120--Hb_005743_050 Hb_000979_120--Hb_001049_130 Hb_000979_120--Hb_029879_020 Hb_000979_120--Hb_031862_220 Hb_031862_220--Hb_001053_070 Hb_031862_220--Hb_000373_210 Hb_031862_220--Hb_001936_100 Hb_031862_220--Hb_000251_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0678176 0.0469303 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.152566

CAGE analysis