Hb_000987_090

Information

Type -
Description -
Location Contig987: 93784-94416
Sequence    

Annotation

kegg
ID mdm:103404833
description uncharacterized LOC103404833
nr
ID KJB13963.1
description hypothetical protein B456_002G103400 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2NKU7
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G103400 PE=4 SV=1
Gene Ontology
ID GO:0005488
description kinesin-4 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000987_090 0.0 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
2 Hb_001787_040 0.2817847855 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_007904_270 0.2849746199 - - -
4 Hb_000275_040 0.2931135752 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_000749_080 0.3037300703 - - Alpha-expansin 12 precursor, putative [Ricinus communis]
6 Hb_000803_040 0.3076790054 - - -
7 Hb_032202_030 0.3141948426 - - -
8 Hb_002498_090 0.3218453203 - - -
9 Hb_000529_240 0.3232312993 - - -
10 Hb_002014_110 0.3236238186 - - -
11 Hb_000111_230 0.3311925583 - - -
12 Hb_037964_010 0.3321138582 - - hypothetical protein MIMGU_mgv1a000906mg [Erythranthe guttata]
13 Hb_007713_010 0.3325186435 - - hypothetical protein JCGZ_18011 [Jatropha curcas]
14 Hb_000008_260 0.3342587249 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009467_030 0.3374734573 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
16 Hb_001115_110 0.3429029778 transcription factor TF Family: NAC NAC transcription factor 057 [Jatropha curcas]
17 Hb_006452_150 0.3528487259 transcription factor TF Family: M-type PREDICTED: MADS-box transcription factor 7-like [Jatropha curcas]
18 Hb_069022_010 0.3532634768 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003209_030 0.3583036912 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
20 Hb_003158_020 0.3590760522 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]

Gene co-expression network

sample Hb_000987_090 Hb_000987_090 Hb_001787_040 Hb_001787_040 Hb_000987_090--Hb_001787_040 Hb_007904_270 Hb_007904_270 Hb_000987_090--Hb_007904_270 Hb_000275_040 Hb_000275_040 Hb_000987_090--Hb_000275_040 Hb_000749_080 Hb_000749_080 Hb_000987_090--Hb_000749_080 Hb_000803_040 Hb_000803_040 Hb_000987_090--Hb_000803_040 Hb_032202_030 Hb_032202_030 Hb_000987_090--Hb_032202_030 Hb_000008_260 Hb_000008_260 Hb_001787_040--Hb_000008_260 Hb_102438_010 Hb_102438_010 Hb_001787_040--Hb_102438_010 Hb_009467_030 Hb_009467_030 Hb_001787_040--Hb_009467_030 Hb_037964_010 Hb_037964_010 Hb_001787_040--Hb_037964_010 Hb_159085_010 Hb_159085_010 Hb_001787_040--Hb_159085_010 Hb_007904_270--Hb_000008_260 Hb_007904_270--Hb_009467_030 Hb_007904_270--Hb_102438_010 Hb_007904_270--Hb_159085_010 Hb_004917_050 Hb_004917_050 Hb_007904_270--Hb_004917_050 Hb_000736_010 Hb_000736_010 Hb_007904_270--Hb_000736_010 Hb_030619_010 Hb_030619_010 Hb_000275_040--Hb_030619_010 Hb_000529_240 Hb_000529_240 Hb_000275_040--Hb_000529_240 Hb_000670_030 Hb_000670_030 Hb_000275_040--Hb_000670_030 Hb_069022_010 Hb_069022_010 Hb_000275_040--Hb_069022_010 Hb_000567_040 Hb_000567_040 Hb_000275_040--Hb_000567_040 Hb_003209_030 Hb_003209_030 Hb_000275_040--Hb_003209_030 Hb_000749_080--Hb_000803_040 Hb_000749_080--Hb_037964_010 Hb_001186_080 Hb_001186_080 Hb_000749_080--Hb_001186_080 Hb_000111_230 Hb_000111_230 Hb_000749_080--Hb_000111_230 Hb_003322_010 Hb_003322_010 Hb_000749_080--Hb_003322_010 Hb_000803_040--Hb_032202_030 Hb_148891_010 Hb_148891_010 Hb_000803_040--Hb_148891_010 Hb_000803_040--Hb_000529_240 Hb_000803_040--Hb_003322_010 Hb_000445_190 Hb_000445_190 Hb_000803_040--Hb_000445_190 Hb_032202_030--Hb_148891_010 Hb_032202_030--Hb_000445_190 Hb_032202_030--Hb_000567_040 Hb_002685_180 Hb_002685_180 Hb_032202_030--Hb_002685_180 Hb_032202_030--Hb_000529_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0410956 0 0 0.0756529 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0933365 0.146724 0 0 0

CAGE analysis