Hb_000987_100

Information

Type -
Description -
Location Contig987: 106479-107678
Sequence    

Annotation

kegg
ID pop:POPTR_0009s15870g
description POPTRDRAFT_821007; forkhead-associated domain-containing family protein
nr
ID ABK96437.1
description unknown [Populus trichocarpa x Populus deltoides]
swissprot
ID Q40412
description Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2 PE=1 SV=1
trembl
ID A9PJ84
description Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
Gene Ontology
ID GO:0005515
description zeaxanthin chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64665: 106480-107688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000987_100 0.0 - - unknown [Populus trichocarpa x Populus deltoides]
2 Hb_000345_260 0.1455359773 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Citrus sinensis]
3 Hb_001198_130 0.1468068373 - - PREDICTED: potassium channel AKT2/3 [Jatropha curcas]
4 Hb_082655_010 0.170557011 - - rhodanese-like domain-containing family protein [Populus trichocarpa]
5 Hb_001168_070 0.1880012098 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
6 Hb_002045_090 0.1889925555 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
7 Hb_000442_040 0.1930186154 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
8 Hb_005217_030 0.1937528923 - - PREDICTED: probable transcriptional regulator SLK3 [Jatropha curcas]
9 Hb_003640_050 0.195923223 - - PREDICTED: protein LUTEIN DEFICIENT 5, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_002107_090 0.1979188229 transcription factor TF Family: bZIP Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
11 Hb_000224_080 0.202797538 - - hypothetical protein RCOM_0510880 [Ricinus communis]
12 Hb_002218_100 0.2044679863 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
13 Hb_002686_160 0.2045005684 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Populus euphratica]
14 Hb_000032_200 0.2049390702 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
15 Hb_000445_210 0.2062797457 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
16 Hb_001123_110 0.2072751873 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009411_040 0.2100107709 - - -
18 Hb_001195_640 0.2124254658 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
19 Hb_003106_200 0.2164541985 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
20 Hb_008375_030 0.2183364997 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000987_100 Hb_000987_100 Hb_000345_260 Hb_000345_260 Hb_000987_100--Hb_000345_260 Hb_001198_130 Hb_001198_130 Hb_000987_100--Hb_001198_130 Hb_082655_010 Hb_082655_010 Hb_000987_100--Hb_082655_010 Hb_001168_070 Hb_001168_070 Hb_000987_100--Hb_001168_070 Hb_002045_090 Hb_002045_090 Hb_000987_100--Hb_002045_090 Hb_000442_040 Hb_000442_040 Hb_000987_100--Hb_000442_040 Hb_000230_480 Hb_000230_480 Hb_000345_260--Hb_000230_480 Hb_002107_090 Hb_002107_090 Hb_000345_260--Hb_002107_090 Hb_004117_190 Hb_004117_190 Hb_000345_260--Hb_004117_190 Hb_001195_640 Hb_001195_640 Hb_000345_260--Hb_001195_640 Hb_002411_060 Hb_002411_060 Hb_000345_260--Hb_002411_060 Hb_000027_140 Hb_000027_140 Hb_001198_130--Hb_000027_140 Hb_001198_130--Hb_001168_070 Hb_001198_130--Hb_082655_010 Hb_000923_100 Hb_000923_100 Hb_001198_130--Hb_000923_100 Hb_001396_120 Hb_001396_120 Hb_001198_130--Hb_001396_120 Hb_017895_060 Hb_017895_060 Hb_082655_010--Hb_017895_060 Hb_082655_010--Hb_002045_090 Hb_000958_120 Hb_000958_120 Hb_082655_010--Hb_000958_120 Hb_005694_050 Hb_005694_050 Hb_082655_010--Hb_005694_050 Hb_005074_050 Hb_005074_050 Hb_082655_010--Hb_005074_050 Hb_009545_070 Hb_009545_070 Hb_082655_010--Hb_009545_070 Hb_004361_060 Hb_004361_060 Hb_001168_070--Hb_004361_060 Hb_004577_010 Hb_004577_010 Hb_001168_070--Hb_004577_010 Hb_000445_210 Hb_000445_210 Hb_001168_070--Hb_000445_210 Hb_002249_170 Hb_002249_170 Hb_001168_070--Hb_002249_170 Hb_080147_020 Hb_080147_020 Hb_001168_070--Hb_080147_020 Hb_000086_640 Hb_000086_640 Hb_001168_070--Hb_000086_640 Hb_004195_140 Hb_004195_140 Hb_002045_090--Hb_004195_140 Hb_003640_050 Hb_003640_050 Hb_002045_090--Hb_003640_050 Hb_002045_090--Hb_000958_120 Hb_003397_030 Hb_003397_030 Hb_002045_090--Hb_003397_030 Hb_001141_050 Hb_001141_050 Hb_002045_090--Hb_001141_050 Hb_000224_080 Hb_000224_080 Hb_002045_090--Hb_000224_080 Hb_160256_010 Hb_160256_010 Hb_000442_040--Hb_160256_010 Hb_005217_030 Hb_005217_030 Hb_000442_040--Hb_005217_030 Hb_021732_010 Hb_021732_010 Hb_000442_040--Hb_021732_010 Hb_000181_060 Hb_000181_060 Hb_000442_040--Hb_000181_060 Hb_001488_030 Hb_001488_030 Hb_000442_040--Hb_001488_030 Hb_000331_420 Hb_000331_420 Hb_000442_040--Hb_000331_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.7815 27.9565 95.7775 31.2872 2.62252 3.2638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.4141 7.18395 5.19085 7.79242 33.3597

CAGE analysis