Hb_000987_130

Information

Type -
Description -
Location Contig987: 117715-120637
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64669: 116164-116741 , PASA_asmbl_64670: 117028-117608 , PASA_asmbl_64672: 120540-120975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000987_130 0.0 - - -
2 Hb_025306_010 0.1490610195 transcription factor TF Family: MYB-related syringolide-induced protein 1-3-1B [Populus trichocarpa]
3 Hb_075449_020 0.1639405901 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
4 Hb_001662_030 0.1676129483 - - PREDICTED: F-box protein SKIP23-like [Populus euphratica]
5 Hb_005565_010 0.1697241354 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
6 Hb_002928_160 0.1713328648 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
7 Hb_005000_300 0.1760045411 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
8 Hb_001096_100 0.1799910698 - - conserved hypothetical protein [Ricinus communis]
9 Hb_178127_010 0.1929819004 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
10 Hb_000175_500 0.1930720249 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
11 Hb_080147_080 0.1936708259 - - peroxiredoxin, putative [Ricinus communis]
12 Hb_000465_080 0.1984730812 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
13 Hb_000540_120 0.1991056264 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
14 Hb_006420_020 0.1998764069 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
15 Hb_003125_030 0.20068269 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
16 Hb_046117_010 0.2010866054 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
17 Hb_000904_130 0.201560093 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
18 Hb_000390_220 0.2029049598 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
19 Hb_000069_230 0.2031389489 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
20 Hb_000976_380 0.2032689241 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000987_130 Hb_000987_130 Hb_025306_010 Hb_025306_010 Hb_000987_130--Hb_025306_010 Hb_075449_020 Hb_075449_020 Hb_000987_130--Hb_075449_020 Hb_001662_030 Hb_001662_030 Hb_000987_130--Hb_001662_030 Hb_005565_010 Hb_005565_010 Hb_000987_130--Hb_005565_010 Hb_002928_160 Hb_002928_160 Hb_000987_130--Hb_002928_160 Hb_005000_300 Hb_005000_300 Hb_000987_130--Hb_005000_300 Hb_025306_010--Hb_075449_020 Hb_000390_220 Hb_000390_220 Hb_025306_010--Hb_000390_220 Hb_025306_010--Hb_001662_030 Hb_003906_190 Hb_003906_190 Hb_025306_010--Hb_003906_190 Hb_006346_040 Hb_006346_040 Hb_025306_010--Hb_006346_040 Hb_000540_120 Hb_000540_120 Hb_025306_010--Hb_000540_120 Hb_075449_020--Hb_001662_030 Hb_075449_020--Hb_000390_220 Hb_075449_020--Hb_000540_120 Hb_011465_030 Hb_011465_030 Hb_075449_020--Hb_011465_030 Hb_001999_250 Hb_001999_250 Hb_075449_020--Hb_001999_250 Hb_000034_160 Hb_000034_160 Hb_001662_030--Hb_000034_160 Hb_000258_120 Hb_000258_120 Hb_001662_030--Hb_000258_120 Hb_001189_130 Hb_001189_130 Hb_001662_030--Hb_001189_130 Hb_001662_030--Hb_000390_220 Hb_000283_130 Hb_000283_130 Hb_001662_030--Hb_000283_130 Hb_009355_030 Hb_009355_030 Hb_005565_010--Hb_009355_030 Hb_005565_010--Hb_025306_010 Hb_000340_010 Hb_000340_010 Hb_005565_010--Hb_000340_010 Hb_045046_010 Hb_045046_010 Hb_005565_010--Hb_045046_010 Hb_005565_010--Hb_075449_020 Hb_002928_160--Hb_001662_030 Hb_000363_280 Hb_000363_280 Hb_002928_160--Hb_000363_280 Hb_005291_040 Hb_005291_040 Hb_002928_160--Hb_005291_040 Hb_002928_160--Hb_075449_020 Hb_000045_320 Hb_000045_320 Hb_002928_160--Hb_000045_320 Hb_002928_160--Hb_000283_130 Hb_000836_370 Hb_000836_370 Hb_005000_300--Hb_000836_370 Hb_000465_080 Hb_000465_080 Hb_005000_300--Hb_000465_080 Hb_000056_300 Hb_000056_300 Hb_005000_300--Hb_000056_300 Hb_003078_030 Hb_003078_030 Hb_005000_300--Hb_003078_030 Hb_001231_080 Hb_001231_080 Hb_005000_300--Hb_001231_080 Hb_005054_310 Hb_005054_310 Hb_005000_300--Hb_005054_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92041 3.34543 0.721466 0.760391 0.973643 0.805407
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.519624 0.204183 0.624119 0.180927 0

CAGE analysis