Hb_000987_140

Information

Type -
Description -
Location Contig987: 120619-130359
Sequence    

Annotation

kegg
ID rcu:RCOM_0848890
description hypothetical protein
nr
ID XP_012089755.1
description PREDICTED: uncharacterized protein LOC105648083 isoform X1 [Jatropha curcas]
swissprot
ID Q5RG82
description Influenza virus NS1A-binding protein homolog A OS=Danio rerio GN=ivns1abpa PE=2 SV=1
trembl
ID B9SL20
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0848890 PE=4 SV=1
Gene Ontology
ID GO:0005515
description kelch-like protein 5 isoform x4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64673: 121222-121515 , PASA_asmbl_64674: 122235-126749 , PASA_asmbl_64675: 126776-128322 , PASA_asmbl_64677: 128862-129288
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000987_140 0.0 - - PREDICTED: uncharacterized protein LOC105648083 isoform X1 [Jatropha curcas]
2 Hb_012573_080 0.097963895 - - hypothetical protein JCGZ_13311 [Jatropha curcas]
3 Hb_000836_270 0.1013968071 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
4 Hb_042038_020 0.108183208 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
5 Hb_011311_020 0.1122549665 - - PREDICTED: myosin-11 isoform X2 [Jatropha curcas]
6 Hb_000418_070 0.1193385859 - - auxin:hydrogen symporter, putative [Ricinus communis]
7 Hb_005914_150 0.1213485709 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
8 Hb_000941_130 0.1213731338 - - gamma-tubulin complex component, putative [Ricinus communis]
9 Hb_004310_050 0.1214320291 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
10 Hb_002890_090 0.1227911349 - - Auxin response factor 1 [Glycine soja]
11 Hb_003467_020 0.126405452 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 13-like [Jatropha curcas]
12 Hb_002400_310 0.1270774527 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
13 Hb_000062_250 0.1274671203 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
14 Hb_000077_070 0.1285091965 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
15 Hb_003455_020 0.1303410077 - - PREDICTED: transportin-1 [Jatropha curcas]
16 Hb_012807_050 0.1304547099 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
17 Hb_000336_140 0.1317647228 - - conserved hypothetical protein [Ricinus communis]
18 Hb_093084_060 0.1320675657 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
19 Hb_000997_090 0.1321327801 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
20 Hb_000853_120 0.1324117876 - - PREDICTED: ethylene response sensor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000987_140 Hb_000987_140 Hb_012573_080 Hb_012573_080 Hb_000987_140--Hb_012573_080 Hb_000836_270 Hb_000836_270 Hb_000987_140--Hb_000836_270 Hb_042038_020 Hb_042038_020 Hb_000987_140--Hb_042038_020 Hb_011311_020 Hb_011311_020 Hb_000987_140--Hb_011311_020 Hb_000418_070 Hb_000418_070 Hb_000987_140--Hb_000418_070 Hb_005914_150 Hb_005914_150 Hb_000987_140--Hb_005914_150 Hb_012573_080--Hb_042038_020 Hb_001123_290 Hb_001123_290 Hb_012573_080--Hb_001123_290 Hb_000140_070 Hb_000140_070 Hb_012573_080--Hb_000140_070 Hb_164010_070 Hb_164010_070 Hb_012573_080--Hb_164010_070 Hb_001049_030 Hb_001049_030 Hb_012573_080--Hb_001049_030 Hb_000645_120 Hb_000645_120 Hb_000836_270--Hb_000645_120 Hb_001140_350 Hb_001140_350 Hb_000836_270--Hb_001140_350 Hb_000510_310 Hb_000510_310 Hb_000836_270--Hb_000510_310 Hb_000215_190 Hb_000215_190 Hb_000836_270--Hb_000215_190 Hb_001454_280 Hb_001454_280 Hb_000836_270--Hb_001454_280 Hb_005321_020 Hb_005321_020 Hb_000836_270--Hb_005321_020 Hb_042038_020--Hb_000140_070 Hb_012807_050 Hb_012807_050 Hb_042038_020--Hb_012807_050 Hb_000865_080 Hb_000865_080 Hb_042038_020--Hb_000865_080 Hb_002188_110 Hb_002188_110 Hb_042038_020--Hb_002188_110 Hb_000959_040 Hb_000959_040 Hb_042038_020--Hb_000959_040 Hb_023827_040 Hb_023827_040 Hb_042038_020--Hb_023827_040 Hb_000330_040 Hb_000330_040 Hb_011311_020--Hb_000330_040 Hb_009701_010 Hb_009701_010 Hb_011311_020--Hb_009701_010 Hb_073562_010 Hb_073562_010 Hb_011311_020--Hb_073562_010 Hb_010874_020 Hb_010874_020 Hb_011311_020--Hb_010874_020 Hb_168697_010 Hb_168697_010 Hb_011311_020--Hb_168697_010 Hb_000525_010 Hb_000525_010 Hb_000418_070--Hb_000525_010 Hb_017987_020 Hb_017987_020 Hb_000418_070--Hb_017987_020 Hb_000418_070--Hb_011311_020 Hb_000418_070--Hb_000836_270 Hb_000179_140 Hb_000179_140 Hb_000418_070--Hb_000179_140 Hb_004452_010 Hb_004452_010 Hb_005914_150--Hb_004452_010 Hb_000427_050 Hb_000427_050 Hb_005914_150--Hb_000427_050 Hb_001584_150 Hb_001584_150 Hb_005914_150--Hb_001584_150 Hb_002636_050 Hb_002636_050 Hb_005914_150--Hb_002636_050 Hb_001266_060 Hb_001266_060 Hb_005914_150--Hb_001266_060 Hb_000230_080 Hb_000230_080 Hb_005914_150--Hb_000230_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1943 13.8161 2.35939 5.00587 8.37148 11.3931
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45207 3.51105 10.872 7.35186 1.31955

CAGE analysis