Hb_000988_010

Information

Type -
Description -
Location Contig988: 16506-19509
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17730g
description POPTRDRAFT_556607; hypothetical protein
nr
ID XP_002306171.2
description hypothetical protein POPTR_0004s17730g [Populus trichocarpa]
swissprot
ID Q9CAD5
description Mitogen-activated protein kinase kinase kinase YODA OS=Arabidopsis thaliana GN=YDA PE=1 SV=1
trembl
ID B9H165
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s17730g PE=4 SV=2
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000988_010 0.0 - - hypothetical protein POPTR_0004s17730g [Populus trichocarpa]
2 Hb_006615_110 0.0858633331 transcription factor TF Family: bZIP hypothetical protein JCGZ_11777 [Jatropha curcas]
3 Hb_045985_010 0.0983281031 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
4 Hb_187739_010 0.1196884373 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
5 Hb_019733_020 0.1379679795 - - hypothetical protein POPTR_0003s15470g [Populus trichocarpa]
6 Hb_002675_210 0.1836299908 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
7 Hb_001518_050 0.191451857 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
8 Hb_002805_100 0.1916273605 - - Receptor-like protein 12 [Morus notabilis]
9 Hb_000039_080 0.1919911378 - - cyclin d, putative [Ricinus communis]
10 Hb_000908_030 0.1932830995 - - small heat-shock protein, putative [Ricinus communis]
11 Hb_003878_130 0.1946330354 - - -
12 Hb_000025_800 0.1955113138 - - hypothetical protein VITISV_020143 [Vitis vinifera]
13 Hb_185437_010 0.1957816909 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
14 Hb_179367_020 0.1973168314 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
15 Hb_001488_120 0.2003298691 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
16 Hb_007125_020 0.2037544875 - - hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
17 Hb_001862_080 0.2047589028 - - hypothetical protein RCOM_1154950 [Ricinus communis]
18 Hb_093385_010 0.2048810055 - - PREDICTED: probable mannitol dehydrogenase [Pyrus x bretschneideri]
19 Hb_119583_030 0.2048987533 - - unnamed protein product [Vitis vinifera]
20 Hb_001976_070 0.2055110795 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]

Gene co-expression network

sample Hb_000988_010 Hb_000988_010 Hb_006615_110 Hb_006615_110 Hb_000988_010--Hb_006615_110 Hb_045985_010 Hb_045985_010 Hb_000988_010--Hb_045985_010 Hb_187739_010 Hb_187739_010 Hb_000988_010--Hb_187739_010 Hb_019733_020 Hb_019733_020 Hb_000988_010--Hb_019733_020 Hb_002675_210 Hb_002675_210 Hb_000988_010--Hb_002675_210 Hb_001518_050 Hb_001518_050 Hb_000988_010--Hb_001518_050 Hb_006615_110--Hb_045985_010 Hb_007125_020 Hb_007125_020 Hb_006615_110--Hb_007125_020 Hb_008196_010 Hb_008196_010 Hb_006615_110--Hb_008196_010 Hb_006615_110--Hb_019733_020 Hb_006615_110--Hb_187739_010 Hb_001862_080 Hb_001862_080 Hb_045985_010--Hb_001862_080 Hb_045985_010--Hb_187739_010 Hb_002805_100 Hb_002805_100 Hb_045985_010--Hb_002805_100 Hb_045985_010--Hb_002675_210 Hb_172983_010 Hb_172983_010 Hb_187739_010--Hb_172983_010 Hb_002163_070 Hb_002163_070 Hb_187739_010--Hb_002163_070 Hb_010252_010 Hb_010252_010 Hb_187739_010--Hb_010252_010 Hb_009083_020 Hb_009083_020 Hb_187739_010--Hb_009083_020 Hb_160950_010 Hb_160950_010 Hb_187739_010--Hb_160950_010 Hb_048987_020 Hb_048987_020 Hb_019733_020--Hb_048987_020 Hb_071433_010 Hb_071433_010 Hb_019733_020--Hb_071433_010 Hb_000039_080 Hb_000039_080 Hb_019733_020--Hb_000039_080 Hb_087314_010 Hb_087314_010 Hb_019733_020--Hb_087314_010 Hb_036602_010 Hb_036602_010 Hb_019733_020--Hb_036602_010 Hb_002675_210--Hb_002805_100 Hb_002675_210--Hb_019733_020 Hb_002675_210--Hb_006615_110 Hb_011120_030 Hb_011120_030 Hb_002675_210--Hb_011120_030 Hb_185437_010 Hb_185437_010 Hb_001518_050--Hb_185437_010 Hb_039440_010 Hb_039440_010 Hb_001518_050--Hb_039440_010 Hb_000025_800 Hb_000025_800 Hb_001518_050--Hb_000025_800 Hb_119583_030 Hb_119583_030 Hb_001518_050--Hb_119583_030 Hb_001518_050--Hb_010252_010 Hb_001518_050--Hb_160950_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0211214 0.0495455 0.104647 0.0127893 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis