Hb_000988_020

Information

Type -
Description -
Location Contig988: 25238-27869
Sequence    

Annotation

kegg
ID vvi:100264251
description transcription factor bHLH112
nr
ID XP_012091443.1
description PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
swissprot
ID Q94JL3
description Transcription factor bHLH112 OS=Arabidopsis thaliana GN=BHLH112 PE=2 SV=1
trembl
ID A0A067JLF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21311 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh112 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64689: 26226-27825
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000988_020 0.0 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
2 Hb_007441_150 0.0969275196 - - Ankyrin repeat family protein [Theobroma cacao]
3 Hb_000373_250 0.1095666586 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
4 Hb_032920_040 0.1116589403 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
5 Hb_000805_150 0.1190131609 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
6 Hb_078901_010 0.1314040877 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
7 Hb_005282_010 0.133007182 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
8 Hb_000024_020 0.1355866122 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
9 Hb_001894_060 0.137377105 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
10 Hb_000032_230 0.1380084236 transcription factor TF Family: ERF hypothetical protein JCGZ_20463 [Jatropha curcas]
11 Hb_005694_150 0.14049585 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
12 Hb_000245_270 0.1406343524 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
13 Hb_000827_090 0.1429001343 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
14 Hb_004143_050 0.1436423287 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
15 Hb_005656_200 0.1443391368 - - Cation transport protein chaC, putative [Ricinus communis]
16 Hb_010142_040 0.1454732952 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
17 Hb_029238_020 0.1469993995 - - PREDICTED: expansin-like A1 [Jatropha curcas]
18 Hb_019026_030 0.1475428172 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
19 Hb_002849_110 0.1478987594 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
20 Hb_002234_200 0.150528867 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000988_020 Hb_000988_020 Hb_007441_150 Hb_007441_150 Hb_000988_020--Hb_007441_150 Hb_000373_250 Hb_000373_250 Hb_000988_020--Hb_000373_250 Hb_032920_040 Hb_032920_040 Hb_000988_020--Hb_032920_040 Hb_000805_150 Hb_000805_150 Hb_000988_020--Hb_000805_150 Hb_078901_010 Hb_078901_010 Hb_000988_020--Hb_078901_010 Hb_005282_010 Hb_005282_010 Hb_000988_020--Hb_005282_010 Hb_000024_020 Hb_000024_020 Hb_007441_150--Hb_000024_020 Hb_001894_060 Hb_001894_060 Hb_007441_150--Hb_001894_060 Hb_032260_100 Hb_032260_100 Hb_007441_150--Hb_032260_100 Hb_007441_150--Hb_000805_150 Hb_029622_080 Hb_029622_080 Hb_007441_150--Hb_029622_080 Hb_007120_010 Hb_007120_010 Hb_000373_250--Hb_007120_010 Hb_000373_250--Hb_005282_010 Hb_002498_250 Hb_002498_250 Hb_000373_250--Hb_002498_250 Hb_002849_110 Hb_002849_110 Hb_000373_250--Hb_002849_110 Hb_001405_060 Hb_001405_060 Hb_000373_250--Hb_001405_060 Hb_010142_040 Hb_010142_040 Hb_032920_040--Hb_010142_040 Hb_000827_090 Hb_000827_090 Hb_032920_040--Hb_000827_090 Hb_082225_010 Hb_082225_010 Hb_032920_040--Hb_082225_010 Hb_032920_040--Hb_000805_150 Hb_002053_030 Hb_002053_030 Hb_032920_040--Hb_002053_030 Hb_000245_270 Hb_000245_270 Hb_000805_150--Hb_000245_270 Hb_000805_150--Hb_078901_010 Hb_116349_090 Hb_116349_090 Hb_000805_150--Hb_116349_090 Hb_011287_020 Hb_011287_020 Hb_000805_150--Hb_011287_020 Hb_009476_010 Hb_009476_010 Hb_000805_150--Hb_009476_010 Hb_000434_050 Hb_000434_050 Hb_078901_010--Hb_000434_050 Hb_078901_010--Hb_009476_010 Hb_078901_010--Hb_000245_270 Hb_000172_080 Hb_000172_080 Hb_078901_010--Hb_000172_080 Hb_078901_010--Hb_000373_250 Hb_005282_010--Hb_001405_060 Hb_002234_200 Hb_002234_200 Hb_005282_010--Hb_002234_200 Hb_003633_150 Hb_003633_150 Hb_005282_010--Hb_003633_150 Hb_005282_010--Hb_002849_110 Hb_098160_010 Hb_098160_010 Hb_005282_010--Hb_098160_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0944127 8.27284 2.15997 3.69836 0.130757 0.0720607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172299 0.293707 0.085123 0.0630667 1.1851

CAGE analysis