Hb_000988_040

Information

Type -
Description -
Location Contig988: 56207-57312
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 019_L22r.ab1: 58294-58997

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000988_040 0.0 - - -
2 Hb_001798_010 0.208107659 transcription factor TF Family: NAC NAC domain containing protein 2-like protein, partial [Helianthus annuus]
3 Hb_001364_040 0.2169708658 - - -
4 Hb_002890_250 0.2295869761 - - PREDICTED: uncharacterized protein LOC102611387 isoform X2 [Citrus sinensis]
5 Hb_007576_030 0.2305667839 - - -
6 Hb_000638_020 0.2403560301 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
7 Hb_004942_010 0.2408000039 - - hypothetical protein AMTR_s00057p00201180 [Amborella trichopoda]
8 Hb_000731_250 0.2542732872 - - -
9 Hb_004157_120 0.2572384079 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
10 Hb_004195_100 0.2799221365 - - PREDICTED: uncharacterized protein LOC104106427 [Nicotiana tomentosiformis]
11 Hb_000997_330 0.2881154548 - - hypothetical protein POPTR_0010s08940g [Populus trichocarpa]
12 Hb_098315_030 0.290671336 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
13 Hb_000380_020 0.2986024057 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
14 Hb_007017_020 0.299170936 - - hypothetical protein JCGZ_21740 [Jatropha curcas]
15 Hb_000832_230 0.3006987868 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
16 Hb_003159_090 0.3015071673 - - -
17 Hb_008643_110 0.3026722243 - - BnaCnng39750D [Brassica napus]
18 Hb_000340_340 0.3036287918 - - hypothetical protein POPTR_0014s13260g [Populus trichocarpa]
19 Hb_143766_100 0.3077437245 - - PREDICTED: uncharacterized protein LOC105637800 [Jatropha curcas]
20 Hb_065378_010 0.3130690521 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000988_040 Hb_000988_040 Hb_001798_010 Hb_001798_010 Hb_000988_040--Hb_001798_010 Hb_001364_040 Hb_001364_040 Hb_000988_040--Hb_001364_040 Hb_002890_250 Hb_002890_250 Hb_000988_040--Hb_002890_250 Hb_007576_030 Hb_007576_030 Hb_000988_040--Hb_007576_030 Hb_000638_020 Hb_000638_020 Hb_000988_040--Hb_000638_020 Hb_004942_010 Hb_004942_010 Hb_000988_040--Hb_004942_010 Hb_002890_270 Hb_002890_270 Hb_001798_010--Hb_002890_270 Hb_001798_010--Hb_001364_040 Hb_001798_010--Hb_000638_020 Hb_001798_010--Hb_002890_250 Hb_004147_040 Hb_004147_040 Hb_001798_010--Hb_004147_040 Hb_000997_330 Hb_000997_330 Hb_001364_040--Hb_000997_330 Hb_000193_240 Hb_000193_240 Hb_001364_040--Hb_000193_240 Hb_001364_040--Hb_000638_020 Hb_000832_230 Hb_000832_230 Hb_001364_040--Hb_000832_230 Hb_001143_090 Hb_001143_090 Hb_001364_040--Hb_001143_090 Hb_001198_050 Hb_001198_050 Hb_002890_250--Hb_001198_050 Hb_002890_250--Hb_000638_020 Hb_008014_070 Hb_008014_070 Hb_002890_250--Hb_008014_070 Hb_000684_370 Hb_000684_370 Hb_002890_250--Hb_000684_370 Hb_004907_130 Hb_004907_130 Hb_002890_250--Hb_004907_130 Hb_000731_250 Hb_000731_250 Hb_007576_030--Hb_000731_250 Hb_007576_030--Hb_004942_010 Hb_004195_100 Hb_004195_100 Hb_007576_030--Hb_004195_100 Hb_005211_070 Hb_005211_070 Hb_007576_030--Hb_005211_070 Hb_003124_060 Hb_003124_060 Hb_007576_030--Hb_003124_060 Hb_000638_020--Hb_000193_240 Hb_000380_020 Hb_000380_020 Hb_000638_020--Hb_000380_020 Hb_015974_010 Hb_015974_010 Hb_000638_020--Hb_015974_010 Hb_004453_140 Hb_004453_140 Hb_000638_020--Hb_004453_140 Hb_163950_010 Hb_163950_010 Hb_000638_020--Hb_163950_010 Hb_000638_020--Hb_000832_230 Hb_089100_050 Hb_089100_050 Hb_004942_010--Hb_089100_050 Hb_000103_030 Hb_000103_030 Hb_004942_010--Hb_000103_030 Hb_105602_020 Hb_105602_020 Hb_004942_010--Hb_105602_020 Hb_001258_140 Hb_001258_140 Hb_004942_010--Hb_001258_140 Hb_004942_020 Hb_004942_020 Hb_004942_010--Hb_004942_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0577589 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0708964 0.0557428 0.100481 0.0225924 0

CAGE analysis