Hb_000988_050

Information

Type -
Description -
Location Contig988: 58013-59678
Sequence    

Annotation

kegg
ID rcu:RCOM_0906790
description hypothetical protein
nr
ID XP_002518588.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RXW9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0906790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64691: 58120-59042 , PASA_asmbl_64692: 59377-59617
cDNA
(Sanger)
(ID:Location)		 019_L22.ab1: 58294-58997 , 021_O03.ab1: 58294-58997 , 033_G01.ab1: 58346-58997

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000988_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000208_240 0.0835760354 - - PREDICTED: uncharacterized protein LOC105631307 [Jatropha curcas]
3 Hb_005488_070 0.1096395419 - - putative cytochrome P450 [Oryza sativa Japonica Group]
4 Hb_003656_030 0.1123161667 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
5 Hb_011021_030 0.1192881352 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
6 Hb_154381_050 0.1224904448 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007111_040 0.1289316709 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
8 Hb_004648_040 0.1336015329 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
9 Hb_000161_030 0.1354348043 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
10 Hb_019613_020 0.1359060356 - - phospholipase C, putative [Ricinus communis]
11 Hb_002078_040 0.1364494678 - - protein with unknown function [Ricinus communis]
12 Hb_000005_050 0.1374241449 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
13 Hb_000230_110 0.141528907 - - PREDICTED: uncharacterized protein LOC105647634 [Jatropha curcas]
14 Hb_002290_060 0.142336931 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
15 Hb_012654_020 0.1424593599 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000028_050 0.1431601445 - - aldose-1-epimerase, putative [Ricinus communis]
17 Hb_000085_280 0.1433307719 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
18 Hb_004156_060 0.1435344016 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
19 Hb_004669_040 0.1438231086 - - ATPase inhibitor, putative [Ricinus communis]
20 Hb_034083_010 0.1445935593 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000988_050 Hb_000988_050 Hb_000208_240 Hb_000208_240 Hb_000988_050--Hb_000208_240 Hb_005488_070 Hb_005488_070 Hb_000988_050--Hb_005488_070 Hb_003656_030 Hb_003656_030 Hb_000988_050--Hb_003656_030 Hb_011021_030 Hb_011021_030 Hb_000988_050--Hb_011021_030 Hb_154381_050 Hb_154381_050 Hb_000988_050--Hb_154381_050 Hb_007111_040 Hb_007111_040 Hb_000988_050--Hb_007111_040 Hb_000208_240--Hb_005488_070 Hb_000208_240--Hb_003656_030 Hb_176022_020 Hb_176022_020 Hb_000208_240--Hb_176022_020 Hb_002506_010 Hb_002506_010 Hb_000208_240--Hb_002506_010 Hb_003404_030 Hb_003404_030 Hb_000208_240--Hb_003404_030 Hb_005488_070--Hb_003656_030 Hb_019613_020 Hb_019613_020 Hb_005488_070--Hb_019613_020 Hb_009510_030 Hb_009510_030 Hb_005488_070--Hb_009510_030 Hb_035524_030 Hb_035524_030 Hb_005488_070--Hb_035524_030 Hb_003627_020 Hb_003627_020 Hb_005488_070--Hb_003627_020 Hb_007178_010 Hb_007178_010 Hb_003656_030--Hb_007178_010 Hb_019654_070 Hb_019654_070 Hb_003656_030--Hb_019654_070 Hb_003656_030--Hb_003627_020 Hb_004126_010 Hb_004126_010 Hb_003656_030--Hb_004126_010 Hb_000005_050 Hb_000005_050 Hb_011021_030--Hb_000005_050 Hb_000050_120 Hb_000050_120 Hb_011021_030--Hb_000050_120 Hb_002172_030 Hb_002172_030 Hb_011021_030--Hb_002172_030 Hb_012654_020 Hb_012654_020 Hb_011021_030--Hb_012654_020 Hb_011021_030--Hb_003656_030 Hb_002078_040 Hb_002078_040 Hb_011021_030--Hb_002078_040 Hb_004156_060 Hb_004156_060 Hb_154381_050--Hb_004156_060 Hb_001115_050 Hb_001115_050 Hb_154381_050--Hb_001115_050 Hb_005410_010 Hb_005410_010 Hb_154381_050--Hb_005410_010 Hb_154381_050--Hb_002172_030 Hb_006029_010 Hb_006029_010 Hb_154381_050--Hb_006029_010 Hb_154381_050--Hb_012654_020 Hb_011644_020 Hb_011644_020 Hb_007111_040--Hb_011644_020 Hb_019871_020 Hb_019871_020 Hb_007111_040--Hb_019871_020 Hb_000392_280 Hb_000392_280 Hb_007111_040--Hb_000392_280 Hb_000300_540 Hb_000300_540 Hb_007111_040--Hb_000300_540 Hb_007111_040--Hb_006029_010 Hb_000684_180 Hb_000684_180 Hb_007111_040--Hb_000684_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
81.9432 9.70298 3.75403 29.0898 178.043 164.913
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
78.6464 31.2692 66.6943 13.7776 5.83544

CAGE analysis