Hb_000988_060

Information

Type -
Description -
Location Contig988: 59699-59914
Sequence    

Annotation

kegg
ID egr:104441158
description uncharacterized LOC104441158
nr
ID KDP20836.1
description hypothetical protein JCGZ_21307 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JAJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21307 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000988_060 0.0 - - hypothetical protein JCGZ_21307 [Jatropha curcas]
2 Hb_012184_050 0.187030695 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
3 Hb_121729_020 0.1937730817 - - DNA binding protein, putative [Ricinus communis]
4 Hb_005535_060 0.1952338218 - - -
5 Hb_000608_040 0.1964893325 - - -
6 Hb_005695_060 0.2117308751 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
7 Hb_063409_020 0.2144808087 - - Calcium-binding protein, putative [Ricinus communis]
8 Hb_000504_170 0.2159647537 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
9 Hb_000160_150 0.2185553903 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
10 Hb_074683_020 0.2195836635 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
11 Hb_002805_170 0.221540485 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
12 Hb_002783_120 0.2233379994 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
13 Hb_107847_010 0.2256283067 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
14 Hb_000169_190 0.2273617401 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
15 Hb_002783_020 0.2279049242 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
16 Hb_000005_320 0.2291499605 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000976_080 0.2311038022 - - hypothetical protein VITISV_034376 [Vitis vinifera]
18 Hb_005846_020 0.2315892169 - - PREDICTED: tubulin-folding cofactor C [Jatropha curcas]
19 Hb_000808_060 0.2325982266 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]
20 Hb_000214_090 0.2335737733 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]

Gene co-expression network

sample Hb_000988_060 Hb_000988_060 Hb_012184_050 Hb_012184_050 Hb_000988_060--Hb_012184_050 Hb_121729_020 Hb_121729_020 Hb_000988_060--Hb_121729_020 Hb_005535_060 Hb_005535_060 Hb_000988_060--Hb_005535_060 Hb_000608_040 Hb_000608_040 Hb_000988_060--Hb_000608_040 Hb_005695_060 Hb_005695_060 Hb_000988_060--Hb_005695_060 Hb_063409_020 Hb_063409_020 Hb_000988_060--Hb_063409_020 Hb_002805_170 Hb_002805_170 Hb_012184_050--Hb_002805_170 Hb_000169_190 Hb_000169_190 Hb_012184_050--Hb_000169_190 Hb_000045_320 Hb_000045_320 Hb_012184_050--Hb_000045_320 Hb_012184_050--Hb_121729_020 Hb_007951_100 Hb_007951_100 Hb_012184_050--Hb_007951_100 Hb_012184_050--Hb_005695_060 Hb_000504_170 Hb_000504_170 Hb_121729_020--Hb_000504_170 Hb_003064_030 Hb_003064_030 Hb_121729_020--Hb_003064_030 Hb_121729_020--Hb_002805_170 Hb_121729_020--Hb_005695_060 Hb_008246_030 Hb_008246_030 Hb_121729_020--Hb_008246_030 Hb_005535_060--Hb_000608_040 Hb_001703_130 Hb_001703_130 Hb_005535_060--Hb_001703_130 Hb_005535_060--Hb_002805_170 Hb_005535_060--Hb_012184_050 Hb_001473_190 Hb_001473_190 Hb_005535_060--Hb_001473_190 Hb_005535_060--Hb_063409_020 Hb_000608_040--Hb_001703_130 Hb_000608_040--Hb_012184_050 Hb_000580_130 Hb_000580_130 Hb_000608_040--Hb_000580_130 Hb_000608_040--Hb_002805_170 Hb_001922_130 Hb_001922_130 Hb_000608_040--Hb_001922_130 Hb_002783_120 Hb_002783_120 Hb_005695_060--Hb_002783_120 Hb_001001_020 Hb_001001_020 Hb_005695_060--Hb_001001_020 Hb_000976_080 Hb_000976_080 Hb_005695_060--Hb_000976_080 Hb_000453_190 Hb_000453_190 Hb_005695_060--Hb_000453_190 Hb_152453_010 Hb_152453_010 Hb_005695_060--Hb_152453_010 Hb_005846_020 Hb_005846_020 Hb_005695_060--Hb_005846_020 Hb_063409_020--Hb_001703_130 Hb_063409_020--Hb_000976_080 Hb_063409_020--Hb_001473_190 Hb_063409_020--Hb_005846_020 Hb_001473_080 Hb_001473_080 Hb_063409_020--Hb_001473_080 Hb_004920_060 Hb_004920_060 Hb_063409_020--Hb_004920_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0945 3.82764 8.29263 0 8.64719 10.818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.15849 1.6903 0 1.18908 1.0113

CAGE analysis