Hb_000990_080

Information

Type -
Description -
Location Contig990: 156934-159151
Sequence    

Annotation

kegg
ID rcu:RCOM_0802540
description gulonolactone oxidase, putative
nr
ID XP_002516554.1
description gulonolactone oxidase, putative [Ricinus communis]
swissprot
ID Q9LYD8
description L-gulonolactone oxidase 3 OS=Arabidopsis thaliana GN=GULLO3 PE=1 SV=1
trembl
ID B9RS35
description Gulonolactone oxidase, putative OS=Ricinus communis GN=RCOM_0802540 PE=4 SV=1
Gene Ontology
ID GO:0016020
description l-gulonolactone oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64765: 156953-159078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000990_080 0.0 - - gulonolactone oxidase, putative [Ricinus communis]
2 Hb_001252_100 0.1023874625 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
3 Hb_000120_240 0.1083270324 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
4 Hb_000761_020 0.1117070349 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
5 Hb_000023_140 0.1127814964 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
6 Hb_001823_100 0.1150338891 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]
7 Hb_000299_040 0.1162608381 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
8 Hb_033843_010 0.1174448035 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
9 Hb_109842_010 0.1195474926 - - PREDICTED: uncharacterized protein LOC105647554 isoform X2 [Jatropha curcas]
10 Hb_000977_130 0.1200908222 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Populus euphratica]
11 Hb_000529_160 0.120161913 - - PREDICTED: uncharacterized protein At1g04910 [Populus euphratica]
12 Hb_000500_130 0.120285613 - - small GTPase [Hevea brasiliensis]
13 Hb_001855_010 0.120559532 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
14 Hb_001360_040 0.1226948914 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
15 Hb_003001_120 0.1231283485 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
16 Hb_000165_030 0.1233552866 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
17 Hb_076787_010 0.1244046363 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
18 Hb_000001_020 0.1244393598 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]
19 Hb_003376_040 0.1248077591 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
20 Hb_000749_150 0.1254058416 - - -

Gene co-expression network

sample Hb_000990_080 Hb_000990_080 Hb_001252_100 Hb_001252_100 Hb_000990_080--Hb_001252_100 Hb_000120_240 Hb_000120_240 Hb_000990_080--Hb_000120_240 Hb_000761_020 Hb_000761_020 Hb_000990_080--Hb_000761_020 Hb_000023_140 Hb_000023_140 Hb_000990_080--Hb_000023_140 Hb_001823_100 Hb_001823_100 Hb_000990_080--Hb_001823_100 Hb_000299_040 Hb_000299_040 Hb_000990_080--Hb_000299_040 Hb_001252_100--Hb_000299_040 Hb_033843_010 Hb_033843_010 Hb_001252_100--Hb_033843_010 Hb_148912_010 Hb_148912_010 Hb_001252_100--Hb_148912_010 Hb_000690_080 Hb_000690_080 Hb_001252_100--Hb_000690_080 Hb_000107_050 Hb_000107_050 Hb_001252_100--Hb_000107_050 Hb_001006_170 Hb_001006_170 Hb_001252_100--Hb_001006_170 Hb_004449_220 Hb_004449_220 Hb_000120_240--Hb_004449_220 Hb_000956_130 Hb_000956_130 Hb_000120_240--Hb_000956_130 Hb_000625_020 Hb_000625_020 Hb_000120_240--Hb_000625_020 Hb_057183_040 Hb_057183_040 Hb_000120_240--Hb_057183_040 Hb_005662_030 Hb_005662_030 Hb_000120_240--Hb_005662_030 Hb_000028_470 Hb_000028_470 Hb_000120_240--Hb_000028_470 Hb_000620_010 Hb_000620_010 Hb_000761_020--Hb_000620_010 Hb_000001_020 Hb_000001_020 Hb_000761_020--Hb_000001_020 Hb_000436_070 Hb_000436_070 Hb_000761_020--Hb_000436_070 Hb_000836_630 Hb_000836_630 Hb_000761_020--Hb_000836_630 Hb_007064_040 Hb_007064_040 Hb_000761_020--Hb_007064_040 Hb_001360_040 Hb_001360_040 Hb_000761_020--Hb_001360_040 Hb_002616_050 Hb_002616_050 Hb_000023_140--Hb_002616_050 Hb_005754_060 Hb_005754_060 Hb_000023_140--Hb_005754_060 Hb_071736_010 Hb_071736_010 Hb_000023_140--Hb_071736_010 Hb_001855_010 Hb_001855_010 Hb_000023_140--Hb_001855_010 Hb_005063_040 Hb_005063_040 Hb_000023_140--Hb_005063_040 Hb_006788_070 Hb_006788_070 Hb_000023_140--Hb_006788_070 Hb_012340_030 Hb_012340_030 Hb_001823_100--Hb_012340_030 Hb_001609_030 Hb_001609_030 Hb_001823_100--Hb_001609_030 Hb_001274_030 Hb_001274_030 Hb_001823_100--Hb_001274_030 Hb_000165_030 Hb_000165_030 Hb_001823_100--Hb_000165_030 Hb_000017_120 Hb_000017_120 Hb_001823_100--Hb_000017_120 Hb_007152_020 Hb_007152_020 Hb_001823_100--Hb_007152_020 Hb_000010_090 Hb_000010_090 Hb_000299_040--Hb_000010_090 Hb_000529_160 Hb_000529_160 Hb_000299_040--Hb_000529_160 Hb_000053_130 Hb_000053_130 Hb_000299_040--Hb_000053_130 Hb_000299_040--Hb_033843_010 Hb_000883_130 Hb_000883_130 Hb_000299_040--Hb_000883_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6976 2.34727 8.87914 8.01996 11.2967 22.4701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4737 11.495 14.7713 3.02062 2.88377

CAGE analysis