Hb_000991_070

Information

Type -
Description -
Location Contig991: 83041-84884
Sequence    

Annotation

kegg
ID pop:POPTR_0016s10540g
description POPTRDRAFT_835532; phytochrome A specific signal transduction component family protein
nr
ID XP_002323514.1
description phytochrome A specific signal transduction component family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IFW7
description Phytochrome A specific signal transduction component family protein OS=Populus trichocarpa GN=POPTR_0016s10540g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000991_070 0.0 - - phytochrome A specific signal transduction component family protein [Populus trichocarpa]
2 Hb_002067_120 0.1116019574 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
3 Hb_010565_010 0.1169451903 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
4 Hb_002974_050 0.1193305233 - - -
5 Hb_000107_200 0.1206457412 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
6 Hb_126295_010 0.125336516 - - PREDICTED: protein SEH1 [Jatropha curcas]
7 Hb_000606_080 0.1280957735 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
8 Hb_004934_070 0.1286383691 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
9 Hb_005023_030 0.1325156948 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
10 Hb_000825_030 0.1325207482 - - zinc binding dehydrogenase, putative [Ricinus communis]
11 Hb_150360_010 0.1337785438 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
12 Hb_150023_010 0.136556603 - - 50S ribosomal protein L2, putative [Ricinus communis]
13 Hb_000051_170 0.1393765597 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
14 Hb_000416_070 0.1396778795 - - hypothetical protein JCGZ_21620 [Jatropha curcas]
15 Hb_041392_010 0.1398688354 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
16 Hb_187739_020 0.1401793426 - - PREDICTED: B2 protein [Jatropha curcas]
17 Hb_011671_090 0.1422521508 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
18 Hb_000160_220 0.1434182594 - - PREDICTED: protein AAR2 homolog isoform X1 [Jatropha curcas]
19 Hb_002374_020 0.1437074734 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
20 Hb_012023_020 0.14435459 - - hypothetical protein JCGZ_03076 [Jatropha curcas]

Gene co-expression network

sample Hb_000991_070 Hb_000991_070 Hb_002067_120 Hb_002067_120 Hb_000991_070--Hb_002067_120 Hb_010565_010 Hb_010565_010 Hb_000991_070--Hb_010565_010 Hb_002974_050 Hb_002974_050 Hb_000991_070--Hb_002974_050 Hb_000107_200 Hb_000107_200 Hb_000991_070--Hb_000107_200 Hb_126295_010 Hb_126295_010 Hb_000991_070--Hb_126295_010 Hb_000606_080 Hb_000606_080 Hb_000991_070--Hb_000606_080 Hb_012023_020 Hb_012023_020 Hb_002067_120--Hb_012023_020 Hb_002067_120--Hb_010565_010 Hb_006951_020 Hb_006951_020 Hb_002067_120--Hb_006951_020 Hb_002067_120--Hb_000107_200 Hb_002067_120--Hb_126295_010 Hb_002067_120--Hb_000606_080 Hb_001386_140 Hb_001386_140 Hb_010565_010--Hb_001386_140 Hb_010565_010--Hb_000606_080 Hb_005023_030 Hb_005023_030 Hb_010565_010--Hb_005023_030 Hb_004934_070 Hb_004934_070 Hb_010565_010--Hb_004934_070 Hb_005714_130 Hb_005714_130 Hb_010565_010--Hb_005714_130 Hb_002974_050--Hb_001386_140 Hb_000825_030 Hb_000825_030 Hb_002974_050--Hb_000825_030 Hb_006663_090 Hb_006663_090 Hb_002974_050--Hb_006663_090 Hb_002974_050--Hb_005023_030 Hb_006629_010 Hb_006629_010 Hb_002974_050--Hb_006629_010 Hb_001018_130 Hb_001018_130 Hb_000107_200--Hb_001018_130 Hb_008120_010 Hb_008120_010 Hb_000107_200--Hb_008120_010 Hb_002445_120 Hb_002445_120 Hb_000107_200--Hb_002445_120 Hb_000606_090 Hb_000606_090 Hb_000107_200--Hb_000606_090 Hb_001135_060 Hb_001135_060 Hb_000107_200--Hb_001135_060 Hb_126295_010--Hb_012023_020 Hb_019053_020 Hb_019053_020 Hb_126295_010--Hb_019053_020 Hb_003549_090 Hb_003549_090 Hb_126295_010--Hb_003549_090 Hb_001541_090 Hb_001541_090 Hb_126295_010--Hb_001541_090 Hb_000025_050 Hb_000025_050 Hb_126295_010--Hb_000025_050 Hb_041392_010 Hb_041392_010 Hb_000606_080--Hb_041392_010 Hb_003502_080 Hb_003502_080 Hb_000606_080--Hb_003502_080 Hb_000197_210 Hb_000197_210 Hb_000606_080--Hb_000197_210 Hb_000679_150 Hb_000679_150 Hb_000606_080--Hb_000679_150 Hb_000606_080--Hb_006951_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.3932 1.34117 1.2234 3.54181 2.76353 5.97444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.42852 1.34188 0.935357 0.981128 0.934346

CAGE analysis