Hb_000994_020

Information

Type -
Description -
Location Contig994: 17118-23343
Sequence    

Annotation

kegg
ID rcu:RCOM_1439680
description methylenetetrahydrofolate dehydrogenase, putative (EC:3.5.4.9)
nr
ID XP_002531873.1
description methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9LHH7
description Bifunctional protein FolD 2 OS=Arabidopsis thaliana GN=FOLD2 PE=2 SV=1
trembl
ID B9T0V4
description Methylenetetrahydrofolate dehydrogenase, putative OS=Ricinus communis GN=RCOM_1439680 PE=3 SV=1
Gene Ontology
ID GO:0005829
description bifunctional protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000994_020 0.0 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
2 Hb_015026_100 0.0629207447 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
3 Hb_000046_600 0.0662735827 - - PREDICTED: cullin-1-like [Jatropha curcas]
4 Hb_000260_770 0.0704313312 - - er lumen protein retaining receptor, putative [Ricinus communis]
5 Hb_006501_010 0.0751235492 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A isoform X1 [Populus euphratica]
6 Hb_000302_170 0.0770470151 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
7 Hb_000300_550 0.082750127 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
8 Hb_005333_140 0.0832896787 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
9 Hb_005322_050 0.084161839 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
10 Hb_027654_020 0.0842186088 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
11 Hb_000529_060 0.0846623371 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
12 Hb_000589_190 0.0847886742 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
13 Hb_000784_080 0.0851217635 - - protein disulfide isomerase, putative [Ricinus communis]
14 Hb_152910_010 0.0856934746 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
15 Hb_172257_010 0.0857608697 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
16 Hb_000134_250 0.0862352115 - - protein with unknown function [Ricinus communis]
17 Hb_005833_030 0.0865608323 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
18 Hb_005730_010 0.0869633876 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
19 Hb_000102_050 0.0893736062 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
20 Hb_000297_030 0.0913295381 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000994_020 Hb_000994_020 Hb_015026_100 Hb_015026_100 Hb_000994_020--Hb_015026_100 Hb_000046_600 Hb_000046_600 Hb_000994_020--Hb_000046_600 Hb_000260_770 Hb_000260_770 Hb_000994_020--Hb_000260_770 Hb_006501_010 Hb_006501_010 Hb_000994_020--Hb_006501_010 Hb_000302_170 Hb_000302_170 Hb_000994_020--Hb_000302_170 Hb_000300_550 Hb_000300_550 Hb_000994_020--Hb_000300_550 Hb_015026_100--Hb_000046_600 Hb_002092_070 Hb_002092_070 Hb_015026_100--Hb_002092_070 Hb_002045_250 Hb_002045_250 Hb_015026_100--Hb_002045_250 Hb_008397_010 Hb_008397_010 Hb_015026_100--Hb_008397_010 Hb_015026_100--Hb_006501_010 Hb_005403_010 Hb_005403_010 Hb_000046_600--Hb_005403_010 Hb_000529_060 Hb_000529_060 Hb_000046_600--Hb_000529_060 Hb_023344_140 Hb_023344_140 Hb_000046_600--Hb_023344_140 Hb_005333_140 Hb_005333_140 Hb_000046_600--Hb_005333_140 Hb_000977_300 Hb_000977_300 Hb_000046_600--Hb_000977_300 Hb_012940_040 Hb_012940_040 Hb_000260_770--Hb_012940_040 Hb_000139_320 Hb_000139_320 Hb_000260_770--Hb_000139_320 Hb_003470_040 Hb_003470_040 Hb_000260_770--Hb_003470_040 Hb_004319_050 Hb_004319_050 Hb_000260_770--Hb_004319_050 Hb_004724_370 Hb_004724_370 Hb_000260_770--Hb_004724_370 Hb_000082_010 Hb_000082_010 Hb_006501_010--Hb_000082_010 Hb_005723_020 Hb_005723_020 Hb_006501_010--Hb_005723_020 Hb_007413_040 Hb_007413_040 Hb_006501_010--Hb_007413_040 Hb_002686_040 Hb_002686_040 Hb_006501_010--Hb_002686_040 Hb_005322_050 Hb_005322_050 Hb_000302_170--Hb_005322_050 Hb_000302_170--Hb_000300_550 Hb_010287_030 Hb_010287_030 Hb_000302_170--Hb_010287_030 Hb_102438_030 Hb_102438_030 Hb_000302_170--Hb_102438_030 Hb_000102_050 Hb_000102_050 Hb_000302_170--Hb_000102_050 Hb_152910_010 Hb_152910_010 Hb_000302_170--Hb_152910_010 Hb_000300_550--Hb_005322_050 Hb_006022_010 Hb_006022_010 Hb_000300_550--Hb_006022_010 Hb_027654_020 Hb_027654_020 Hb_000300_550--Hb_027654_020 Hb_172257_010 Hb_172257_010 Hb_000300_550--Hb_172257_010 Hb_000640_190 Hb_000640_190 Hb_000300_550--Hb_000640_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8123 25.7313 36.6724 23.9223 20.4695 15.5146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.71856 5.69658 8.30066 23.901 14.7378

CAGE analysis