Hb_000994_100

Information

Type -
Description -
Location Contig994: 87234-87584
Sequence    

Annotation

kegg
ID rcu:RCOM_1439830
description RALFL33, putative
nr
ID XP_002531878.1
description RALFL33, putative [Ricinus communis]
swissprot
ID Q8L9P8
description Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1
trembl
ID B9T0V9
description RALFL33, putative OS=Ricinus communis GN=RCOM_1439830 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein ralf-like 33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000994_100 0.0 - - RALFL33, putative [Ricinus communis]
2 Hb_002970_070 0.0742458716 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
3 Hb_002042_160 0.0773426228 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
4 Hb_055529_010 0.0881307844 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
5 Hb_029260_010 0.1065448328 - - nitrate transporter, putative [Ricinus communis]
6 Hb_000347_420 0.1081337041 - - hypothetical protein JCGZ_24696 [Jatropha curcas]
7 Hb_010417_090 0.1141498255 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
8 Hb_007943_020 0.1149242322 - - transcription factor, putative [Ricinus communis]
9 Hb_004307_070 0.119539179 - - kinase, putative [Ricinus communis]
10 Hb_000115_290 0.1234049495 - - PREDICTED: uncharacterized protein LOC105124123 [Populus euphratica]
11 Hb_002477_080 0.1252260767 - - hypothetical protein RCOM_0653450 [Ricinus communis]
12 Hb_032260_130 0.1276195914 - - hypothetical protein POPTR_0003s13800g [Populus trichocarpa]
13 Hb_172633_020 0.1353554012 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Populus euphratica]
14 Hb_000020_030 0.1359388682 - - protein binding protein, putative [Ricinus communis]
15 Hb_130967_010 0.137502108 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_002490_090 0.1402184743 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
17 Hb_138606_020 0.1407056903 - - Nitrate transporter2.5 [Theobroma cacao]
18 Hb_126466_010 0.1447323839 - - alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_000028_460 0.1474829306 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
20 Hb_116194_010 0.1482118892 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_000994_100 Hb_000994_100 Hb_002970_070 Hb_002970_070 Hb_000994_100--Hb_002970_070 Hb_002042_160 Hb_002042_160 Hb_000994_100--Hb_002042_160 Hb_055529_010 Hb_055529_010 Hb_000994_100--Hb_055529_010 Hb_029260_010 Hb_029260_010 Hb_000994_100--Hb_029260_010 Hb_000347_420 Hb_000347_420 Hb_000994_100--Hb_000347_420 Hb_010417_090 Hb_010417_090 Hb_000994_100--Hb_010417_090 Hb_002970_070--Hb_002042_160 Hb_002970_070--Hb_055529_010 Hb_002970_070--Hb_010417_090 Hb_130967_010 Hb_130967_010 Hb_002970_070--Hb_130967_010 Hb_000020_030 Hb_000020_030 Hb_002970_070--Hb_000020_030 Hb_172633_020 Hb_172633_020 Hb_002042_160--Hb_172633_020 Hb_184942_010 Hb_184942_010 Hb_002042_160--Hb_184942_010 Hb_002042_160--Hb_055529_010 Hb_150084_010 Hb_150084_010 Hb_002042_160--Hb_150084_010 Hb_055529_010--Hb_172633_020 Hb_002490_090 Hb_002490_090 Hb_055529_010--Hb_002490_090 Hb_000172_740 Hb_000172_740 Hb_055529_010--Hb_000172_740 Hb_138606_020 Hb_138606_020 Hb_029260_010--Hb_138606_020 Hb_005357_020 Hb_005357_020 Hb_029260_010--Hb_005357_020 Hb_012743_020 Hb_012743_020 Hb_029260_010--Hb_012743_020 Hb_029260_010--Hb_000347_420 Hb_000840_050 Hb_000840_050 Hb_029260_010--Hb_000840_050 Hb_007943_020 Hb_007943_020 Hb_029260_010--Hb_007943_020 Hb_000347_420--Hb_007943_020 Hb_004307_070 Hb_004307_070 Hb_000347_420--Hb_004307_070 Hb_000347_420--Hb_138606_020 Hb_000095_070 Hb_000095_070 Hb_000347_420--Hb_000095_070 Hb_000070_070 Hb_000070_070 Hb_010417_090--Hb_000070_070 Hb_000115_290 Hb_000115_290 Hb_010417_090--Hb_000115_290 Hb_000856_250 Hb_000856_250 Hb_010417_090--Hb_000856_250 Hb_002236_010 Hb_002236_010 Hb_010417_090--Hb_002236_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.53597 0.539241 5.1812 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.7041 2.38893

CAGE analysis