Hb_000994_120

Information

Type -
Description -
Location Contig994: 91687-96882
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12610g
description POPTRDRAFT_731888; ALG3 family protein
nr
ID ABK95338.1
description unknown [Populus trichocarpa]
swissprot
ID O82244
description Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase OS=Arabidopsis thaliana GN=ALG3 PE=1 SV=1
trembl
ID A9PG35
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0005783
description dol-p-man:man c -pp-dol alpha- -mannosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64816: 91649-96884 , PASA_asmbl_64817: 96290-96556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000994_120 0.0 - - unknown [Populus trichocarpa]
2 Hb_008103_050 0.079699376 - - hypothetical protein JCGZ_07422 [Jatropha curcas]
3 Hb_000141_080 0.0923696726 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
4 Hb_009787_030 0.0941626645 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
5 Hb_000599_300 0.0951337211 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
6 Hb_004127_030 0.0957513166 - - putative Rab geranylgeranyl transferase type II beta subunit family protein [Populus trichocarpa]
7 Hb_001703_060 0.0989918023 - - protein kinase, putative [Ricinus communis]
8 Hb_003376_330 0.0996300767 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
9 Hb_001366_370 0.1006827927 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
10 Hb_001512_010 0.1020217513 - - PREDICTED: uncharacterized protein LOC105633759 [Jatropha curcas]
11 Hb_011794_080 0.1057029146 - - acyl-CoA thioesterase, putative [Ricinus communis]
12 Hb_001427_160 0.1062748382 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_011671_040 0.1064746433 - - PREDICTED: uncharacterized protein LOC105646469 isoform X2 [Jatropha curcas]
14 Hb_000270_490 0.1083066212 - - betaine aldehyde dehydrogenase 1 [Jatropha curcas]
15 Hb_089995_010 0.1090642441 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like [Eucalyptus grandis]
16 Hb_023371_020 0.1106437796 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
17 Hb_001225_080 0.1125204064 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Populus euphratica]
18 Hb_002685_110 0.1126487037 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
19 Hb_025194_100 0.1126856692 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
20 Hb_002411_040 0.1129665655 - - PREDICTED: cysteine proteinase inhibitor 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000994_120 Hb_000994_120 Hb_008103_050 Hb_008103_050 Hb_000994_120--Hb_008103_050 Hb_000141_080 Hb_000141_080 Hb_000994_120--Hb_000141_080 Hb_009787_030 Hb_009787_030 Hb_000994_120--Hb_009787_030 Hb_000599_300 Hb_000599_300 Hb_000994_120--Hb_000599_300 Hb_004127_030 Hb_004127_030 Hb_000994_120--Hb_004127_030 Hb_001703_060 Hb_001703_060 Hb_000994_120--Hb_001703_060 Hb_000483_300 Hb_000483_300 Hb_008103_050--Hb_000483_300 Hb_001512_010 Hb_001512_010 Hb_008103_050--Hb_001512_010 Hb_004157_050 Hb_004157_050 Hb_008103_050--Hb_004157_050 Hb_004044_040 Hb_004044_040 Hb_008103_050--Hb_004044_040 Hb_066842_010 Hb_066842_010 Hb_008103_050--Hb_066842_010 Hb_002053_140 Hb_002053_140 Hb_000141_080--Hb_002053_140 Hb_030736_020 Hb_030736_020 Hb_000141_080--Hb_030736_020 Hb_001366_370 Hb_001366_370 Hb_000141_080--Hb_001366_370 Hb_000141_080--Hb_009787_030 Hb_000735_110 Hb_000735_110 Hb_000141_080--Hb_000735_110 Hb_001427_160 Hb_001427_160 Hb_000141_080--Hb_001427_160 Hb_009787_030--Hb_001427_160 Hb_009787_030--Hb_001366_370 Hb_011344_120 Hb_011344_120 Hb_009787_030--Hb_011344_120 Hb_000115_150 Hb_000115_150 Hb_009787_030--Hb_000115_150 Hb_009787_030--Hb_002053_140 Hb_002893_080 Hb_002893_080 Hb_000599_300--Hb_002893_080 Hb_003633_030 Hb_003633_030 Hb_000599_300--Hb_003633_030 Hb_007672_060 Hb_007672_060 Hb_000599_300--Hb_007672_060 Hb_001579_270 Hb_001579_270 Hb_000599_300--Hb_001579_270 Hb_002473_130 Hb_002473_130 Hb_000599_300--Hb_002473_130 Hb_000054_090 Hb_000054_090 Hb_000599_300--Hb_000054_090 Hb_000862_030 Hb_000862_030 Hb_004127_030--Hb_000862_030 Hb_000159_090 Hb_000159_090 Hb_004127_030--Hb_000159_090 Hb_026198_070 Hb_026198_070 Hb_004127_030--Hb_026198_070 Hb_011671_040 Hb_011671_040 Hb_004127_030--Hb_011671_040 Hb_000270_490 Hb_000270_490 Hb_004127_030--Hb_000270_490 Hb_004127_030--Hb_001366_370 Hb_000331_200 Hb_000331_200 Hb_001703_060--Hb_000331_200 Hb_000030_030 Hb_000030_030 Hb_001703_060--Hb_000030_030 Hb_000510_300 Hb_000510_300 Hb_001703_060--Hb_000510_300 Hb_001703_060--Hb_001427_160 Hb_001225_080 Hb_001225_080 Hb_001703_060--Hb_001225_080 Hb_000081_160 Hb_000081_160 Hb_001703_060--Hb_000081_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.56272 3.26744 5.53278 11.4806 5.46643 7.68919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1542 6.94099 6.21796 6.83841 6.03426

CAGE analysis