Hb_000995_010

Information

Type -
Description -
Location Contig995: 14007-16092
Sequence    

Annotation

kegg
ID rcu:RCOM_0225930
description Splicing factor, arginine/serine-rich, putative
nr
ID XP_012074361.1
description PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KJ41
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08791 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine arginine-rich splicing factor 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000995_010 0.0 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
2 Hb_000808_160 0.1314514377 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
3 Hb_001699_050 0.1422115526 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
4 Hb_000061_100 0.1434661784 - - hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]
5 Hb_098160_010 0.1526974304 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
6 Hb_003106_180 0.155373096 - - Peroxidase 65 precursor, putative [Ricinus communis]
7 Hb_001405_060 0.16004246 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
8 Hb_002324_050 0.1637082463 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
9 Hb_000522_130 0.1654706595 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
10 Hb_023386_050 0.1660526725 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005000_050 0.1695372923 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
12 Hb_000116_290 0.1699166856 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
13 Hb_006618_020 0.1703062754 - - Vacuolar-processing enzyme precursor [Ricinus communis]
14 Hb_003633_150 0.1706579662 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
15 Hb_000976_340 0.1715058616 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_000236_120 0.17354471 - - -
17 Hb_001791_010 0.1738517415 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710 [Jatropha curcas]
18 Hb_004032_250 0.1746786329 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009476_110 0.1750030167 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
20 Hb_017604_020 0.1755275359 - - hypothetical protein JCGZ_22673 [Jatropha curcas]

Gene co-expression network

sample Hb_000995_010 Hb_000995_010 Hb_000808_160 Hb_000808_160 Hb_000995_010--Hb_000808_160 Hb_001699_050 Hb_001699_050 Hb_000995_010--Hb_001699_050 Hb_000061_100 Hb_000061_100 Hb_000995_010--Hb_000061_100 Hb_098160_010 Hb_098160_010 Hb_000995_010--Hb_098160_010 Hb_003106_180 Hb_003106_180 Hb_000995_010--Hb_003106_180 Hb_001405_060 Hb_001405_060 Hb_000995_010--Hb_001405_060 Hb_002571_010 Hb_002571_010 Hb_000808_160--Hb_002571_010 Hb_017604_020 Hb_017604_020 Hb_000808_160--Hb_017604_020 Hb_000522_130 Hb_000522_130 Hb_000808_160--Hb_000522_130 Hb_000094_010 Hb_000094_010 Hb_000808_160--Hb_000094_010 Hb_000976_340 Hb_000976_340 Hb_000808_160--Hb_000976_340 Hb_000808_160--Hb_001699_050 Hb_001699_050--Hb_017604_020 Hb_004032_250 Hb_004032_250 Hb_001699_050--Hb_004032_250 Hb_000007_160 Hb_000007_160 Hb_001699_050--Hb_000007_160 Hb_009510_050 Hb_009510_050 Hb_001699_050--Hb_009510_050 Hb_002324_050 Hb_002324_050 Hb_001699_050--Hb_002324_050 Hb_004166_010 Hb_004166_010 Hb_000061_100--Hb_004166_010 Hb_000061_100--Hb_000808_160 Hb_000061_100--Hb_002571_010 Hb_000172_080 Hb_000172_080 Hb_000061_100--Hb_000172_080 Hb_000363_110 Hb_000363_110 Hb_000061_100--Hb_000363_110 Hb_098160_010--Hb_001405_060 Hb_007574_050 Hb_007574_050 Hb_098160_010--Hb_007574_050 Hb_002234_200 Hb_002234_200 Hb_098160_010--Hb_002234_200 Hb_098160_010--Hb_000363_110 Hb_005282_010 Hb_005282_010 Hb_098160_010--Hb_005282_010 Hb_001898_010 Hb_001898_010 Hb_098160_010--Hb_001898_010 Hb_003106_180--Hb_002324_050 Hb_003964_010 Hb_003964_010 Hb_003106_180--Hb_003964_010 Hb_003106_180--Hb_004032_250 Hb_002324_040 Hb_002324_040 Hb_003106_180--Hb_002324_040 Hb_003106_180--Hb_001699_050 Hb_001405_060--Hb_005282_010 Hb_001405_060--Hb_002234_200 Hb_002849_110 Hb_002849_110 Hb_001405_060--Hb_002849_110 Hb_000373_250 Hb_000373_250 Hb_001405_060--Hb_000373_250 Hb_003633_150 Hb_003633_150 Hb_001405_060--Hb_003633_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0221226 0.342413 0.105756 0.177125 0 0.00864246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0224439 0 0 0.0772794 0.0746529

CAGE analysis