Hb_000995_040

Information

Type -
Description -
Location Contig995: 88024-92412
Sequence    

Annotation

kegg
ID rcu:RCOM_0225960
description hypothetical protein
nr
ID XP_002530167.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVZ8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0225960 PE=4 SV=1
Gene Ontology
ID GO:0016853
description peptidyl-prolyl cis-trans isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64821: 87992-92388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000995_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012022_120 0.0695186213 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
3 Hb_005278_020 0.0844020346 - - PREDICTED: sorcin-like [Jatropha curcas]
4 Hb_000484_020 0.0858824833 - - hypothetical protein CISIN_1g030884mg [Citrus sinensis]
5 Hb_000086_550 0.0870375483 - - Os02g0814700 [Oryza sativa Japonica Group]
6 Hb_032202_090 0.0871621237 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
7 Hb_000505_140 0.0899285201 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
8 Hb_003126_090 0.0935642697 - - Rop1 [Hevea brasiliensis]
9 Hb_000085_320 0.0943522751 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
10 Hb_006816_210 0.0943833777 - - PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]
11 Hb_000317_340 0.0946231063 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010042_010 0.0953033143 - - Urease accessory protein ureD, putative [Ricinus communis]
13 Hb_000364_020 0.0963657148 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
14 Hb_000787_140 0.0967436339 - - Trafficking protein particle complex subunit, putative [Ricinus communis]
15 Hb_002207_110 0.0986498721 - - -
16 Hb_005357_130 0.0992912883 - - hypothetical protein L484_012905 [Morus notabilis]
17 Hb_004032_100 0.1013709004 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
18 Hb_001016_030 0.1015396116 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
19 Hb_000172_030 0.1044855315 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
20 Hb_002830_020 0.1046312003 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000995_040 Hb_000995_040 Hb_012022_120 Hb_012022_120 Hb_000995_040--Hb_012022_120 Hb_005278_020 Hb_005278_020 Hb_000995_040--Hb_005278_020 Hb_000484_020 Hb_000484_020 Hb_000995_040--Hb_000484_020 Hb_000086_550 Hb_000086_550 Hb_000995_040--Hb_000086_550 Hb_032202_090 Hb_032202_090 Hb_000995_040--Hb_032202_090 Hb_000505_140 Hb_000505_140 Hb_000995_040--Hb_000505_140 Hb_012022_120--Hb_000505_140 Hb_002830_020 Hb_002830_020 Hb_012022_120--Hb_002830_020 Hb_012022_120--Hb_032202_090 Hb_000000_170 Hb_000000_170 Hb_012022_120--Hb_000000_170 Hb_012022_120--Hb_005278_020 Hb_026314_020 Hb_026314_020 Hb_005278_020--Hb_026314_020 Hb_017413_010 Hb_017413_010 Hb_005278_020--Hb_017413_010 Hb_001016_030 Hb_001016_030 Hb_005278_020--Hb_001016_030 Hb_001842_040 Hb_001842_040 Hb_005278_020--Hb_001842_040 Hb_004784_020 Hb_004784_020 Hb_005278_020--Hb_004784_020 Hb_002571_020 Hb_002571_020 Hb_000484_020--Hb_002571_020 Hb_000484_020--Hb_012022_120 Hb_000312_090 Hb_000312_090 Hb_000484_020--Hb_000312_090 Hb_000484_020--Hb_000505_140 Hb_003126_090 Hb_003126_090 Hb_000484_020--Hb_003126_090 Hb_005357_130 Hb_005357_130 Hb_000086_550--Hb_005357_130 Hb_000340_140 Hb_000340_140 Hb_000086_550--Hb_000340_140 Hb_004032_100 Hb_004032_100 Hb_000086_550--Hb_004032_100 Hb_000364_020 Hb_000364_020 Hb_000086_550--Hb_000364_020 Hb_006816_530 Hb_006816_530 Hb_000086_550--Hb_006816_530 Hb_011161_050 Hb_011161_050 Hb_000086_550--Hb_011161_050 Hb_000317_340 Hb_000317_340 Hb_032202_090--Hb_000317_340 Hb_000545_150 Hb_000545_150 Hb_032202_090--Hb_000545_150 Hb_032202_090--Hb_000505_140 Hb_012573_070 Hb_012573_070 Hb_032202_090--Hb_012573_070 Hb_000926_300 Hb_000926_300 Hb_032202_090--Hb_000926_300 Hb_000505_140--Hb_000000_170 Hb_004502_020 Hb_004502_020 Hb_000505_140--Hb_004502_020 Hb_000505_140--Hb_000086_550 Hb_000505_140--Hb_000926_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.4051 2.658 6.35159 22.9015 18.4036 25.4013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.0767 44.0594 21.3055 8.97184 8.94868

CAGE analysis