Hb_000995_070

Information

Type -
Description -
Location Contig995: 101721-102904
Sequence    

Annotation

kegg
ID rcu:RCOM_0501760
description short chain alcohol dehydrogenase, putative (EC:1.1.1.53)
nr
ID XP_012087518.1
description PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
swissprot
ID Q94KL8
description Secoisolariciresinol dehydrogenase (Fragment) OS=Podophyllum peltatum PE=1 SV=1
trembl
ID A0A067JMA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24000 PE=3 SV=1
Gene Ontology
ID GO:0016491
description secoisolariciresinol dehydrogenase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000995_070 0.0 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
2 Hb_100873_030 0.1282718519 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
3 Hb_001114_340 0.1529243258 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
4 Hb_000784_040 0.1717320644 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
5 Hb_002073_120 0.1923213379 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
6 Hb_000172_570 0.1929823903 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
7 Hb_010417_010 0.1955369423 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
8 Hb_042223_010 0.201039686 - - Protein Z, putative [Ricinus communis]
9 Hb_018954_010 0.2067611598 - - -
10 Hb_003086_130 0.2104041581 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
11 Hb_000227_200 0.2123689183 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
12 Hb_000009_070 0.2170826615 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
13 Hb_001534_170 0.2192738033 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
14 Hb_064885_080 0.2195308343 - - -
15 Hb_004208_100 0.2200745013 - - Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]
16 Hb_000141_240 0.2211429535 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
17 Hb_010174_070 0.224382729 - - -
18 Hb_080653_010 0.2336438997 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_008790_050 0.2386311004 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000972_010 0.2397357677 - - PREDICTED: kinesin KP1 [Jatropha curcas]

Gene co-expression network

sample Hb_000995_070 Hb_000995_070 Hb_100873_030 Hb_100873_030 Hb_000995_070--Hb_100873_030 Hb_001114_340 Hb_001114_340 Hb_000995_070--Hb_001114_340 Hb_000784_040 Hb_000784_040 Hb_000995_070--Hb_000784_040 Hb_002073_120 Hb_002073_120 Hb_000995_070--Hb_002073_120 Hb_000172_570 Hb_000172_570 Hb_000995_070--Hb_000172_570 Hb_010417_010 Hb_010417_010 Hb_000995_070--Hb_010417_010 Hb_000141_240 Hb_000141_240 Hb_100873_030--Hb_000141_240 Hb_042223_010 Hb_042223_010 Hb_100873_030--Hb_042223_010 Hb_018954_010 Hb_018954_010 Hb_100873_030--Hb_018954_010 Hb_156473_010 Hb_156473_010 Hb_100873_030--Hb_156473_010 Hb_000009_070 Hb_000009_070 Hb_100873_030--Hb_000009_070 Hb_064885_080 Hb_064885_080 Hb_001114_340--Hb_064885_080 Hb_010174_070 Hb_010174_070 Hb_001114_340--Hb_010174_070 Hb_001114_340--Hb_100873_030 Hb_001114_340--Hb_042223_010 Hb_001114_340--Hb_000784_040 Hb_000227_200 Hb_000227_200 Hb_000784_040--Hb_000227_200 Hb_091433_040 Hb_091433_040 Hb_000784_040--Hb_091433_040 Hb_000784_040--Hb_042223_010 Hb_005914_070 Hb_005914_070 Hb_000784_040--Hb_005914_070 Hb_003599_070 Hb_003599_070 Hb_000784_040--Hb_003599_070 Hb_002073_120--Hb_000172_570 Hb_002073_120--Hb_010417_010 Hb_004208_100 Hb_004208_100 Hb_002073_120--Hb_004208_100 Hb_002073_120--Hb_000009_070 Hb_002073_120--Hb_000141_240 Hb_000172_570--Hb_000227_200 Hb_000141_030 Hb_000141_030 Hb_000172_570--Hb_000141_030 Hb_000172_570--Hb_003599_070 Hb_000172_570--Hb_000784_040 Hb_010417_010--Hb_000009_070 Hb_010417_010--Hb_004208_100 Hb_010417_010--Hb_100873_030 Hb_001534_170 Hb_001534_170 Hb_010417_010--Hb_001534_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.307274 0 0 0 0.020551 0.689438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09414 4.12986 19.8291 2.3099 0.0757619

CAGE analysis