Hb_000996_140

Information

Type -
Description -
Location Contig996: 138583-140907
Sequence    

Annotation

kegg
ID pop:POPTR_0004s14860g
description hypothetical protein
nr
ID XP_012086947.1
description PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
swissprot
ID Q8QZZ7
description EKC/KEOPS complex subunit Tprkb OS=Mus musculus GN=Tprkb PE=2 SV=1
trembl
ID A0A067JN98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20622 PE=3 SV=1
Gene Ontology
ID GO:0005634
description ekc keops complex subunit tprkb

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64836: 138643-140971 , PASA_asmbl_64837: 140193-140534
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000996_140 0.0 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
2 Hb_007441_330 0.0548373479 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
3 Hb_026053_020 0.0648990574 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
4 Hb_010175_040 0.0673406214 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
5 Hb_003226_100 0.0679398268 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
6 Hb_002768_030 0.0691427308 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
7 Hb_003018_010 0.0734223739 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
8 Hb_001476_080 0.0737670984 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
9 Hb_001141_140 0.0739593803 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
10 Hb_134949_020 0.0744603561 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
11 Hb_003683_110 0.0745626351 - - JHL10I11.3 [Jatropha curcas]
12 Hb_001341_090 0.0746030371 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
13 Hb_000840_180 0.0774409796 - - protein BOLA2 [Jatropha curcas]
14 Hb_006925_040 0.0775484445 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
15 Hb_004459_040 0.0779414799 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
16 Hb_000920_110 0.0789046868 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
17 Hb_001016_030 0.0795967048 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
18 Hb_001780_040 0.0802039012 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
19 Hb_001484_070 0.081193645 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001616_040 0.081661924 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]

Gene co-expression network

sample Hb_000996_140 Hb_000996_140 Hb_007441_330 Hb_007441_330 Hb_000996_140--Hb_007441_330 Hb_026053_020 Hb_026053_020 Hb_000996_140--Hb_026053_020 Hb_010175_040 Hb_010175_040 Hb_000996_140--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_000996_140--Hb_003226_100 Hb_002768_030 Hb_002768_030 Hb_000996_140--Hb_002768_030 Hb_003018_010 Hb_003018_010 Hb_000996_140--Hb_003018_010 Hb_007441_330--Hb_026053_020 Hb_007441_330--Hb_010175_040 Hb_000826_100 Hb_000826_100 Hb_007441_330--Hb_000826_100 Hb_000103_320 Hb_000103_320 Hb_007441_330--Hb_000103_320 Hb_008071_020 Hb_008071_020 Hb_007441_330--Hb_008071_020 Hb_131181_010 Hb_131181_010 Hb_026053_020--Hb_131181_010 Hb_000189_240 Hb_000189_240 Hb_026053_020--Hb_000189_240 Hb_026053_020--Hb_008071_020 Hb_018133_020 Hb_018133_020 Hb_026053_020--Hb_018133_020 Hb_001141_140 Hb_001141_140 Hb_026053_020--Hb_001141_140 Hb_000261_140 Hb_000261_140 Hb_010175_040--Hb_000261_140 Hb_000920_110 Hb_000920_110 Hb_010175_040--Hb_000920_110 Hb_143496_010 Hb_143496_010 Hb_010175_040--Hb_143496_010 Hb_000417_360 Hb_000417_360 Hb_010175_040--Hb_000417_360 Hb_010175_040--Hb_001141_140 Hb_001616_040 Hb_001616_040 Hb_010175_040--Hb_001616_040 Hb_003226_100--Hb_000920_110 Hb_004157_030 Hb_004157_030 Hb_003226_100--Hb_004157_030 Hb_003018_020 Hb_003018_020 Hb_003226_100--Hb_003018_020 Hb_002056_050 Hb_002056_050 Hb_003226_100--Hb_002056_050 Hb_003226_100--Hb_001616_040 Hb_003226_100--Hb_143496_010 Hb_003683_110 Hb_003683_110 Hb_002768_030--Hb_003683_110 Hb_001780_040 Hb_001780_040 Hb_002768_030--Hb_001780_040 Hb_000127_180 Hb_000127_180 Hb_002768_030--Hb_000127_180 Hb_000035_370 Hb_000035_370 Hb_002768_030--Hb_000035_370 Hb_006831_130 Hb_006831_130 Hb_002768_030--Hb_006831_130 Hb_003018_010--Hb_003226_100 Hb_000025_620 Hb_000025_620 Hb_003018_010--Hb_000025_620 Hb_000836_470 Hb_000836_470 Hb_003018_010--Hb_000836_470 Hb_002226_060 Hb_002226_060 Hb_003018_010--Hb_002226_060 Hb_000656_240 Hb_000656_240 Hb_003018_010--Hb_000656_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.4049 10.6124 28.1685 27.7638 18.8989 26.8607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.3712 79.9849 32.4021 15.4212 20.0161

CAGE analysis