Hb_000997_020

Information

Type -
Description -
Location Contig997: 22461-35496
Sequence    

Annotation

kegg
ID pmum:103324142
description uncharacterized LOC103324142
nr
ID XP_012066712.1
description PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L208
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00269 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_020 0.0 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
2 Hb_001741_140 0.0662898901 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
3 Hb_002997_170 0.0724598774 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
4 Hb_000905_190 0.0778846463 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
5 Hb_143629_010 0.0782141827 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
6 Hb_005928_060 0.0800823518 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
7 Hb_003453_020 0.0834724598 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
8 Hb_005288_160 0.0858355322 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
9 Hb_000175_490 0.087839812 - - PREDICTED: probable polygalacturonase At1g80170 isoform X1 [Jatropha curcas]
10 Hb_000156_140 0.0905521018 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
11 Hb_004032_050 0.0920764168 - - hypothetical protein CISIN_1g014592mg [Citrus sinensis]
12 Hb_000290_020 0.0928703875 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
13 Hb_000172_370 0.093943896 - - -
14 Hb_002631_050 0.0956151157 - - membrane associated ring finger 1,8, putative [Ricinus communis]
15 Hb_000209_090 0.0971176766 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
16 Hb_022256_040 0.0976808371 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
17 Hb_003126_040 0.0982119009 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001135_160 0.0983407046 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
19 Hb_003605_070 0.0983414465 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
20 Hb_005503_030 0.0984852795 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000997_020 Hb_000997_020 Hb_001741_140 Hb_001741_140 Hb_000997_020--Hb_001741_140 Hb_002997_170 Hb_002997_170 Hb_000997_020--Hb_002997_170 Hb_000905_190 Hb_000905_190 Hb_000997_020--Hb_000905_190 Hb_143629_010 Hb_143629_010 Hb_000997_020--Hb_143629_010 Hb_005928_060 Hb_005928_060 Hb_000997_020--Hb_005928_060 Hb_003453_020 Hb_003453_020 Hb_000997_020--Hb_003453_020 Hb_010128_130 Hb_010128_130 Hb_001741_140--Hb_010128_130 Hb_001741_140--Hb_002997_170 Hb_001741_140--Hb_143629_010 Hb_001741_140--Hb_000905_190 Hb_000107_050 Hb_000107_050 Hb_001741_140--Hb_000107_050 Hb_000977_130 Hb_000977_130 Hb_002997_170--Hb_000977_130 Hb_002997_170--Hb_000905_190 Hb_168918_020 Hb_168918_020 Hb_002997_170--Hb_168918_020 Hb_012340_030 Hb_012340_030 Hb_002997_170--Hb_012340_030 Hb_003642_060 Hb_003642_060 Hb_000905_190--Hb_003642_060 Hb_001214_130 Hb_001214_130 Hb_000905_190--Hb_001214_130 Hb_000905_190--Hb_005928_060 Hb_000905_190--Hb_003453_020 Hb_008887_050 Hb_008887_050 Hb_143629_010--Hb_008887_050 Hb_005503_030 Hb_005503_030 Hb_143629_010--Hb_005503_030 Hb_000141_060 Hb_000141_060 Hb_143629_010--Hb_000141_060 Hb_171900_100 Hb_171900_100 Hb_143629_010--Hb_171900_100 Hb_031939_010 Hb_031939_010 Hb_143629_010--Hb_031939_010 Hb_005527_050 Hb_005527_050 Hb_005928_060--Hb_005527_050 Hb_005928_060--Hb_001214_130 Hb_000019_230 Hb_000019_230 Hb_005928_060--Hb_000019_230 Hb_005237_010 Hb_005237_010 Hb_005928_060--Hb_005237_010 Hb_000322_050 Hb_000322_050 Hb_003453_020--Hb_000322_050 Hb_004096_170 Hb_004096_170 Hb_003453_020--Hb_004096_170 Hb_000176_110 Hb_000176_110 Hb_003453_020--Hb_000176_110 Hb_003453_020--Hb_005527_050 Hb_000012_090 Hb_000012_090 Hb_003453_020--Hb_000012_090 Hb_012305_070 Hb_012305_070 Hb_003453_020--Hb_012305_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.342 3.17865 8.23647 5.6203 29.4025 26.6272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.4267 16.0397 12.7298 6.18682 3.76021

CAGE analysis