Hb_000997_080

Information

Type -
Description -
Location Contig997: 86323-92326
Sequence    

Annotation

kegg
ID rcu:RCOM_0908940
description hypothetical protein
nr
ID XP_012069778.1
description PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
swissprot
ID Q8GYX9
description Protein WVD2-like 1 OS=Arabidopsis thaliana GN=WDL1 PE=1 SV=1
trembl
ID A0A067L717
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02283 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64848: 86411-92447 , PASA_asmbl_64849: 91032-91548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_080 0.0 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
2 Hb_006002_050 0.0897721903 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
3 Hb_000984_130 0.0936117609 - - tubulin [Ornithogalum longebracteatum]
4 Hb_000003_610 0.0985430962 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase [Jatropha curcas]
5 Hb_002701_030 0.1056863766 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
6 Hb_000011_280 0.1069460988 - - pectinesterase family protein [Populus trichocarpa]
7 Hb_006788_110 0.1089227931 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
8 Hb_006088_020 0.1122476723 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
9 Hb_004531_160 0.11615537 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
10 Hb_000462_070 0.1165935061 - - PREDICTED: probable pectinesterase 15 [Jatropha curcas]
11 Hb_000297_140 0.1181561678 - - hypothetical protein RCOM_0293450 [Ricinus communis]
12 Hb_058471_020 0.1281758125 - - PREDICTED: expansin-B3-like [Jatropha curcas]
13 Hb_000398_070 0.1284955729 - - hypothetical protein VITISV_011880 [Vitis vinifera]
14 Hb_064546_010 0.1299411412 - - PREDICTED: peroxidase 3 [Jatropha curcas]
15 Hb_003097_160 0.1315383608 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
16 Hb_000922_400 0.1323273235 - - PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
17 Hb_003893_180 0.1323766885 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
18 Hb_007760_020 0.132891331 - - PREDICTED: expansin-A1 [Populus euphratica]
19 Hb_002783_280 0.1333880002 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
20 Hb_003376_140 0.1351578703 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]

Gene co-expression network

sample Hb_000997_080 Hb_000997_080 Hb_006002_050 Hb_006002_050 Hb_000997_080--Hb_006002_050 Hb_000984_130 Hb_000984_130 Hb_000997_080--Hb_000984_130 Hb_000003_610 Hb_000003_610 Hb_000997_080--Hb_000003_610 Hb_002701_030 Hb_002701_030 Hb_000997_080--Hb_002701_030 Hb_000011_280 Hb_000011_280 Hb_000997_080--Hb_000011_280 Hb_006788_110 Hb_006788_110 Hb_000997_080--Hb_006788_110 Hb_006002_050--Hb_000011_280 Hb_001159_230 Hb_001159_230 Hb_006002_050--Hb_001159_230 Hb_000003_280 Hb_000003_280 Hb_006002_050--Hb_000003_280 Hb_002783_280 Hb_002783_280 Hb_006002_050--Hb_002783_280 Hb_000297_140 Hb_000297_140 Hb_006002_050--Hb_000297_140 Hb_000984_130--Hb_000011_280 Hb_064546_010 Hb_064546_010 Hb_000984_130--Hb_064546_010 Hb_000735_020 Hb_000735_020 Hb_000984_130--Hb_000735_020 Hb_000984_130--Hb_006788_110 Hb_000984_130--Hb_002701_030 Hb_006088_020 Hb_006088_020 Hb_000003_610--Hb_006088_020 Hb_002918_270 Hb_002918_270 Hb_000003_610--Hb_002918_270 Hb_000003_610--Hb_000984_130 Hb_000261_070 Hb_000261_070 Hb_000003_610--Hb_000261_070 Hb_002902_060 Hb_002902_060 Hb_000003_610--Hb_002902_060 Hb_000017_250 Hb_000017_250 Hb_002701_030--Hb_000017_250 Hb_005648_020 Hb_005648_020 Hb_002701_030--Hb_005648_020 Hb_003849_170 Hb_003849_170 Hb_002701_030--Hb_003849_170 Hb_002600_120 Hb_002600_120 Hb_002701_030--Hb_002600_120 Hb_004531_160 Hb_004531_160 Hb_002701_030--Hb_004531_160 Hb_001663_060 Hb_001663_060 Hb_000011_280--Hb_001663_060 Hb_000395_310 Hb_000395_310 Hb_000011_280--Hb_000395_310 Hb_000011_280--Hb_006788_110 Hb_033312_070 Hb_033312_070 Hb_006788_110--Hb_033312_070 Hb_003376_140 Hb_003376_140 Hb_006788_110--Hb_003376_140 Hb_006788_110--Hb_000735_020 Hb_006788_110--Hb_004531_160 Hb_011918_070 Hb_011918_070 Hb_006788_110--Hb_011918_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.595654 1.94586 15.3223 55.2105 1.06583 0.739327
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.329753 0.337245 0.291894 4.19656 15.6527

CAGE analysis