Hb_000997_090

Information

Type -
Description -
Location Contig997: 101952-109144
Sequence    

Annotation

kegg
ID rcu:RCOM_0908950
description phosphatidylcholine transfer protein, putative
nr
ID XP_012069777.1
description PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
swissprot
ID Q8R1R3
description StAR-related lipid transfer protein 7, mitochondrial OS=Mus musculus GN=Stard7 PE=2 SV=2
trembl
ID A0A067L880
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02282 PE=4 SV=1
Gene Ontology
ID GO:0008289
description polyketide cyclase dehydrase and lipid transport superfamily protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64850: 102037-109097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_090 0.0 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
2 Hb_156850_030 0.0880610229 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
3 Hb_010080_060 0.0883236513 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_000032_320 0.0916240979 - - protein binding protein, putative [Ricinus communis]
5 Hb_000364_180 0.0970589756 - - PREDICTED: PI-PLC X domain-containing protein At5g67130 [Jatropha curcas]
6 Hb_000077_070 0.1001024484 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
7 Hb_004055_040 0.1009104948 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
8 Hb_042083_070 0.1014106964 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
9 Hb_001728_100 0.1018588649 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
10 Hb_033152_080 0.1038958594 - - RNA-binding protein Nova-1, putative [Ricinus communis]
11 Hb_022408_010 0.1041413595 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
12 Hb_000196_040 0.1067678983 - - Patellin-3, putative [Ricinus communis]
13 Hb_005730_030 0.1078235788 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
14 Hb_004734_060 0.1078585255 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
15 Hb_004310_050 0.1081414769 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
16 Hb_001366_040 0.1108525873 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
17 Hb_000336_140 0.1109789625 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000953_010 0.1110564519 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
19 Hb_000270_780 0.1121747284 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
20 Hb_001274_020 0.1125584217 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000997_090 Hb_000997_090 Hb_156850_030 Hb_156850_030 Hb_000997_090--Hb_156850_030 Hb_010080_060 Hb_010080_060 Hb_000997_090--Hb_010080_060 Hb_000032_320 Hb_000032_320 Hb_000997_090--Hb_000032_320 Hb_000364_180 Hb_000364_180 Hb_000997_090--Hb_000364_180 Hb_000077_070 Hb_000077_070 Hb_000997_090--Hb_000077_070 Hb_004055_040 Hb_004055_040 Hb_000997_090--Hb_004055_040 Hb_156850_030--Hb_000032_320 Hb_001728_100 Hb_001728_100 Hb_156850_030--Hb_001728_100 Hb_000953_010 Hb_000953_010 Hb_156850_030--Hb_000953_010 Hb_000059_210 Hb_000059_210 Hb_156850_030--Hb_000059_210 Hb_004204_080 Hb_004204_080 Hb_156850_030--Hb_004204_080 Hb_156850_030--Hb_000077_070 Hb_004310_050 Hb_004310_050 Hb_010080_060--Hb_004310_050 Hb_000227_380 Hb_000227_380 Hb_010080_060--Hb_000227_380 Hb_033152_080 Hb_033152_080 Hb_010080_060--Hb_033152_080 Hb_000002_440 Hb_000002_440 Hb_010080_060--Hb_000002_440 Hb_005122_080 Hb_005122_080 Hb_010080_060--Hb_005122_080 Hb_000032_320--Hb_001728_100 Hb_002301_220 Hb_002301_220 Hb_000032_320--Hb_002301_220 Hb_001541_020 Hb_001541_020 Hb_000032_320--Hb_001541_020 Hb_022408_010 Hb_022408_010 Hb_000032_320--Hb_022408_010 Hb_006586_050 Hb_006586_050 Hb_000032_320--Hb_006586_050 Hb_000196_040 Hb_000196_040 Hb_000364_180--Hb_000196_040 Hb_005730_030 Hb_005730_030 Hb_000364_180--Hb_005730_030 Hb_000120_050 Hb_000120_050 Hb_000364_180--Hb_000120_050 Hb_000270_780 Hb_000270_780 Hb_000364_180--Hb_000270_780 Hb_042083_070 Hb_042083_070 Hb_000364_180--Hb_042083_070 Hb_000077_230 Hb_000077_230 Hb_000077_070--Hb_000077_230 Hb_000025_360 Hb_000025_360 Hb_000077_070--Hb_000025_360 Hb_000336_140 Hb_000336_140 Hb_000077_070--Hb_000336_140 Hb_000077_070--Hb_000032_320 Hb_001247_070 Hb_001247_070 Hb_000077_070--Hb_001247_070 Hb_000077_070--Hb_001728_100 Hb_002928_060 Hb_002928_060 Hb_004055_040--Hb_002928_060 Hb_004055_040--Hb_005730_030 Hb_001366_040 Hb_001366_040 Hb_004055_040--Hb_001366_040 Hb_001871_040 Hb_001871_040 Hb_004055_040--Hb_001871_040 Hb_000244_250 Hb_000244_250 Hb_004055_040--Hb_000244_250 Hb_000915_050 Hb_000915_050 Hb_004055_040--Hb_000915_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
430.839 335.514 58.1292 90.8761 418.235 358.363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
213.287 98.6445 327.888 190.771 46.6644

CAGE analysis