Hb_000997_100

Information

Type -
Description -
Location Contig997: 111911-120734
Sequence    

Annotation

kegg
ID rcu:RCOM_0908960
description hypothetical protein
nr
ID XP_012069776.1
description PREDICTED: uncharacterized protein LOC105632094 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZB1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02281 PE=4 SV=1
Gene Ontology
ID GO:0005634
description zinc knuckle family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64852: 112057-118172 , PASA_asmbl_64853: 112247-112542 , PASA_asmbl_64854: 114989-115515 , PASA_asmbl_64855: 118196-120834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_100 0.0 - - PREDICTED: uncharacterized protein LOC105632094 isoform X2 [Jatropha curcas]
2 Hb_000031_230 0.1019716211 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
3 Hb_000529_130 0.1049483848 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
4 Hb_006422_020 0.1208779725 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
5 Hb_003734_080 0.1238867741 - - myosin vIII, putative [Ricinus communis]
6 Hb_003849_160 0.1291493312 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
7 Hb_004994_350 0.1301186944 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
8 Hb_003053_050 0.1301817644 - - PREDICTED: putative phospholipid-transporting ATPase 8 [Jatropha curcas]
9 Hb_007576_070 0.1356524548 - - PREDICTED: uncharacterized protein LOC105640040 isoform X3 [Jatropha curcas]
10 Hb_008092_050 0.1377619708 - - PREDICTED: uncharacterized protein LOC105142434 [Populus euphratica]
11 Hb_003462_060 0.1382578982 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
12 Hb_001396_240 0.1404336925 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
13 Hb_004116_160 0.1458518282 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
14 Hb_000562_070 0.1468892346 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
15 Hb_002053_050 0.1470457678 - - Kinesin heavy chain, putative [Ricinus communis]
16 Hb_006911_070 0.1496193886 - - 50S ribosomal protein L1p, putative [Ricinus communis]
17 Hb_001408_030 0.1502845214 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
18 Hb_007192_090 0.1507636289 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
19 Hb_000281_070 0.1531929766 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
20 Hb_000260_710 0.154068256 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000997_100 Hb_000997_100 Hb_000031_230 Hb_000031_230 Hb_000997_100--Hb_000031_230 Hb_000529_130 Hb_000529_130 Hb_000997_100--Hb_000529_130 Hb_006422_020 Hb_006422_020 Hb_000997_100--Hb_006422_020 Hb_003734_080 Hb_003734_080 Hb_000997_100--Hb_003734_080 Hb_003849_160 Hb_003849_160 Hb_000997_100--Hb_003849_160 Hb_004994_350 Hb_004994_350 Hb_000997_100--Hb_004994_350 Hb_003053_050 Hb_003053_050 Hb_000031_230--Hb_003053_050 Hb_007192_090 Hb_007192_090 Hb_000031_230--Hb_007192_090 Hb_008092_060 Hb_008092_060 Hb_000031_230--Hb_008092_060 Hb_001250_020 Hb_001250_020 Hb_000031_230--Hb_001250_020 Hb_001408_030 Hb_001408_030 Hb_000031_230--Hb_001408_030 Hb_000529_130--Hb_004994_350 Hb_000562_070 Hb_000562_070 Hb_000529_130--Hb_000562_070 Hb_029552_020 Hb_029552_020 Hb_000529_130--Hb_029552_020 Hb_001279_020 Hb_001279_020 Hb_000529_130--Hb_001279_020 Hb_001396_020 Hb_001396_020 Hb_000529_130--Hb_001396_020 Hb_000529_130--Hb_003849_160 Hb_006422_020--Hb_000031_230 Hb_000815_230 Hb_000815_230 Hb_006422_020--Hb_000815_230 Hb_000042_060 Hb_000042_060 Hb_006422_020--Hb_000042_060 Hb_000964_170 Hb_000964_170 Hb_006422_020--Hb_000964_170 Hb_006422_020--Hb_003849_160 Hb_002249_030 Hb_002249_030 Hb_003734_080--Hb_002249_030 Hb_003734_080--Hb_007192_090 Hb_002942_130 Hb_002942_130 Hb_003734_080--Hb_002942_130 Hb_004254_100 Hb_004254_100 Hb_003734_080--Hb_004254_100 Hb_000264_230 Hb_000264_230 Hb_003734_080--Hb_000264_230 Hb_000170_160 Hb_000170_160 Hb_003734_080--Hb_000170_160 Hb_003849_160--Hb_029552_020 Hb_001999_320 Hb_001999_320 Hb_003849_160--Hb_001999_320 Hb_002675_080 Hb_002675_080 Hb_003849_160--Hb_002675_080 Hb_009078_020 Hb_009078_020 Hb_003849_160--Hb_009078_020 Hb_000968_060 Hb_000968_060 Hb_003849_160--Hb_000968_060 Hb_004994_350--Hb_029552_020 Hb_001178_030 Hb_001178_030 Hb_004994_350--Hb_001178_030 Hb_004994_350--Hb_001396_020 Hb_002600_070 Hb_002600_070 Hb_004994_350--Hb_002600_070 Hb_000748_090 Hb_000748_090 Hb_004994_350--Hb_000748_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.39799 12.7958 15.0808 12.6444 6.40122 8.17767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.63251 1.36198 1.50033 2.12068 22.1106

CAGE analysis