Hb_000997_120

Information

Type -
Description -
Location Contig997: 130835-133241
Sequence    

Annotation

kegg
ID rcu:RCOM_0908990
description 40S ribosomal protein S15, putative
nr
ID ADR71252.1
description 40S ribosomal protein S15E [Hevea brasiliensis]
swissprot
ID O65059
description 40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1
trembl
ID I3NML5
description 40S ribosomal protein S15E OS=Hevea brasiliensis GN=RPS15E PE=2 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64858: 130825-133195 , PASA_asmbl_64859: 131430-131864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_120 0.0 - - 40S ribosomal protein S15E [Hevea brasiliensis]
2 Hb_007120_090 0.0417520046 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
3 Hb_002838_030 0.0633834926 - - 40S ribosomal protein S25A [Hevea brasiliensis]
4 Hb_012395_130 0.0764626663 - - Os02g0814700 [Oryza sativa Japonica Group]
5 Hb_004543_040 0.0805889491 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_004125_110 0.0815898881 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
7 Hb_027684_020 0.0854773357 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
8 Hb_000915_120 0.0872657787 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
9 Hb_001789_050 0.0874955806 - - 60S ribosomal protein L36-2 [Morus notabilis]
10 Hb_000948_220 0.0908692582 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
11 Hb_000203_020 0.0917626171 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
12 Hb_086639_090 0.0941033844 - - 60S ribosomal protein L7a, putative [Ricinus communis]
13 Hb_001269_490 0.0953228082 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000134_070 0.0958418622 - - 60S ribosomal protein L6, putative [Ricinus communis]
15 Hb_002006_130 0.098401972 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
16 Hb_026398_010 0.0994703585 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
17 Hb_174865_010 0.099540773 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
18 Hb_172221_010 0.1002026475 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
19 Hb_009476_020 0.1012769613 - - tryptophan biosynthesis protein, putative [Ricinus communis]
20 Hb_179296_010 0.1022663067 - - hypothetical protein B456_006G094200 [Gossypium raimondii]

Gene co-expression network

sample Hb_000997_120 Hb_000997_120 Hb_007120_090 Hb_007120_090 Hb_000997_120--Hb_007120_090 Hb_002838_030 Hb_002838_030 Hb_000997_120--Hb_002838_030 Hb_012395_130 Hb_012395_130 Hb_000997_120--Hb_012395_130 Hb_004543_040 Hb_004543_040 Hb_000997_120--Hb_004543_040 Hb_004125_110 Hb_004125_110 Hb_000997_120--Hb_004125_110 Hb_027684_020 Hb_027684_020 Hb_000997_120--Hb_027684_020 Hb_001789_050 Hb_001789_050 Hb_007120_090--Hb_001789_050 Hb_007120_090--Hb_002838_030 Hb_000948_220 Hb_000948_220 Hb_007120_090--Hb_000948_220 Hb_000676_160 Hb_000676_160 Hb_007120_090--Hb_000676_160 Hb_007120_090--Hb_012395_130 Hb_000915_120 Hb_000915_120 Hb_002838_030--Hb_000915_120 Hb_002838_030--Hb_000948_220 Hb_003020_330 Hb_003020_330 Hb_002838_030--Hb_003020_330 Hb_000087_130 Hb_000087_130 Hb_002838_030--Hb_000087_130 Hb_004754_070 Hb_004754_070 Hb_012395_130--Hb_004754_070 Hb_011377_020 Hb_011377_020 Hb_012395_130--Hb_011377_020 Hb_001780_050 Hb_001780_050 Hb_012395_130--Hb_001780_050 Hb_172221_010 Hb_172221_010 Hb_012395_130--Hb_172221_010 Hb_086639_090 Hb_086639_090 Hb_004543_040--Hb_086639_090 Hb_091433_020 Hb_091433_020 Hb_004543_040--Hb_091433_020 Hb_001369_170 Hb_001369_170 Hb_004543_040--Hb_001369_170 Hb_000496_120 Hb_000496_120 Hb_004543_040--Hb_000496_120 Hb_006478_150 Hb_006478_150 Hb_004543_040--Hb_006478_150 Hb_003018_050 Hb_003018_050 Hb_004125_110--Hb_003018_050 Hb_003226_210 Hb_003226_210 Hb_004125_110--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_004125_110--Hb_001214_160 Hb_000134_070 Hb_000134_070 Hb_004125_110--Hb_000134_070 Hb_002660_030 Hb_002660_030 Hb_004125_110--Hb_002660_030 Hb_001269_490 Hb_001269_490 Hb_027684_020--Hb_001269_490 Hb_027684_020--Hb_002838_030 Hb_027684_020--Hb_004125_110 Hb_000116_040 Hb_000116_040 Hb_027684_020--Hb_000116_040 Hb_027684_020--Hb_007120_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.0522 51.1401 88.032 187.526 64.056 147.761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
296.997 673.756 156.572 163.555 61.5866

CAGE analysis