Hb_000997_150

Information

Type -
Description -
Location Contig997: 145210-150552
Sequence    

Annotation

kegg
ID rcu:RCOM_0909020
description ankyrin repeat-containing protein, putative
nr
ID XP_002517018.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q6AWW5
description Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1
trembl
ID B9RTE9
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0909020 PE=4 SV=1
Gene Ontology
ID GO:0005515
description ankyrin repeat-containing protein at5g02620-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64867: 145793-146236 , PASA_asmbl_64869: 148388-149501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_150 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_000732_070 0.1176030655 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
3 Hb_001454_220 0.1228297228 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
4 Hb_001269_310 0.1289199966 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
5 Hb_002400_230 0.1313048808 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Jatropha curcas]
6 Hb_044155_010 0.1417362499 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
7 Hb_000185_150 0.1453987174 - - Heme-binding protein, putative [Ricinus communis]
8 Hb_000345_490 0.1483152592 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
9 Hb_003026_030 0.1491899434 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
10 Hb_013405_150 0.1508443001 - - PREDICTED: actin cytoskeleton-regulatory complex protein pan1 [Jatropha curcas]
11 Hb_002942_090 0.1513801552 - - DNAJ heat shock N-terminal domain-containing protein, putative [Theobroma cacao]
12 Hb_000024_120 0.1516921696 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
13 Hb_069841_010 0.1523035515 - - resistance protein [Quercus suber]
14 Hb_000805_200 0.1524410764 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
15 Hb_000264_180 0.1525638881 - - PREDICTED: uncharacterized protein LOC100777318 [Glycine max]
16 Hb_001571_030 0.1559457545 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]
17 Hb_001565_060 0.1564494092 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial [Jatropha curcas]
18 Hb_000671_060 0.1564863544 - - protein binding protein, putative [Ricinus communis]
19 Hb_020805_100 0.1575056096 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
20 Hb_000890_010 0.1578686484 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000997_150 Hb_000997_150 Hb_000732_070 Hb_000732_070 Hb_000997_150--Hb_000732_070 Hb_001454_220 Hb_001454_220 Hb_000997_150--Hb_001454_220 Hb_001269_310 Hb_001269_310 Hb_000997_150--Hb_001269_310 Hb_002400_230 Hb_002400_230 Hb_000997_150--Hb_002400_230 Hb_044155_010 Hb_044155_010 Hb_000997_150--Hb_044155_010 Hb_000185_150 Hb_000185_150 Hb_000997_150--Hb_000185_150 Hb_020805_100 Hb_020805_100 Hb_000732_070--Hb_020805_100 Hb_000086_050 Hb_000086_050 Hb_000732_070--Hb_000086_050 Hb_003895_020 Hb_003895_020 Hb_000732_070--Hb_003895_020 Hb_000732_070--Hb_002400_230 Hb_000334_130 Hb_000334_130 Hb_000732_070--Hb_000334_130 Hb_006573_160 Hb_006573_160 Hb_000732_070--Hb_006573_160 Hb_000024_120 Hb_000024_120 Hb_001454_220--Hb_000024_120 Hb_002073_280 Hb_002073_280 Hb_001454_220--Hb_002073_280 Hb_002902_020 Hb_002902_020 Hb_001454_220--Hb_002902_020 Hb_000345_490 Hb_000345_490 Hb_001454_220--Hb_000345_490 Hb_000230_430 Hb_000230_430 Hb_001454_220--Hb_000230_430 Hb_007576_220 Hb_007576_220 Hb_001454_220--Hb_007576_220 Hb_004223_110 Hb_004223_110 Hb_001269_310--Hb_004223_110 Hb_001051_090 Hb_001051_090 Hb_001269_310--Hb_001051_090 Hb_001269_310--Hb_002400_230 Hb_000175_630 Hb_000175_630 Hb_001269_310--Hb_000175_630 Hb_003026_030 Hb_003026_030 Hb_001269_310--Hb_003026_030 Hb_001454_170 Hb_001454_170 Hb_002400_230--Hb_001454_170 Hb_002400_230--Hb_000334_130 Hb_002400_230--Hb_001454_220 Hb_152540_010 Hb_152540_010 Hb_002400_230--Hb_152540_010 Hb_004032_230 Hb_004032_230 Hb_002400_230--Hb_004032_230 Hb_000077_120 Hb_000077_120 Hb_044155_010--Hb_000077_120 Hb_013405_150 Hb_013405_150 Hb_044155_010--Hb_013405_150 Hb_002291_060 Hb_002291_060 Hb_044155_010--Hb_002291_060 Hb_006132_040 Hb_006132_040 Hb_044155_010--Hb_006132_040 Hb_000139_220 Hb_000139_220 Hb_044155_010--Hb_000139_220 Hb_000098_140 Hb_000098_140 Hb_044155_010--Hb_000098_140 Hb_000185_150--Hb_000086_050 Hb_000185_150--Hb_000024_120 Hb_003638_010 Hb_003638_010 Hb_000185_150--Hb_003638_010 Hb_000988_030 Hb_000988_030 Hb_000185_150--Hb_000988_030 Hb_009449_090 Hb_009449_090 Hb_000185_150--Hb_009449_090 Hb_005054_190 Hb_005054_190 Hb_000185_150--Hb_005054_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.29729 3.86844 3.3849 1.39462 3.10963 1.24255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.366466 0.346069 0.60835 0.297139 1.8921

CAGE analysis