Hb_000997_180

Information

Type -
Description -
Location Contig997: 167374-167910
Sequence    

Annotation

kegg
ID rcu:RCOM_0909030
description hypothetical protein
nr
ID XP_002517019.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P93829
description PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1
trembl
ID B9RTF0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0909030 PE=4 SV=1
Gene Ontology
ID GO:0005783
description pra1 family protein d-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64871: 167506-168087
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000699_230 0.0835209823 - - Ankyrin repeat family protein, putative [Theobroma cacao]
3 Hb_002915_060 0.0918683657 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
4 Hb_000625_090 0.0955787017 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003327_070 0.0997450182 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
6 Hb_000490_060 0.1009576007 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
7 Hb_006501_160 0.1016398799 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
8 Hb_001269_380 0.1071004581 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
9 Hb_003688_180 0.1086966659 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
10 Hb_000684_040 0.1097061513 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
11 Hb_000260_660 0.1114979044 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007382_120 0.1156008844 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
13 Hb_002982_020 0.1161758003 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
14 Hb_007839_020 0.1172603933 - - conserved hypothetical protein [Ricinus communis]
15 Hb_020178_040 0.1177897596 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003544_030 0.1200090339 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
17 Hb_006006_040 0.1216684951 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
18 Hb_001328_080 0.1218638318 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
19 Hb_011360_050 0.122195561 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
20 Hb_002217_220 0.122242443 - - hypothetical protein POPTR_0010s15930g [Populus trichocarpa]

Gene co-expression network

sample Hb_000997_180 Hb_000997_180 Hb_000699_230 Hb_000699_230 Hb_000997_180--Hb_000699_230 Hb_002915_060 Hb_002915_060 Hb_000997_180--Hb_002915_060 Hb_000625_090 Hb_000625_090 Hb_000997_180--Hb_000625_090 Hb_003327_070 Hb_003327_070 Hb_000997_180--Hb_003327_070 Hb_000490_060 Hb_000490_060 Hb_000997_180--Hb_000490_060 Hb_006501_160 Hb_006501_160 Hb_000997_180--Hb_006501_160 Hb_000110_300 Hb_000110_300 Hb_000699_230--Hb_000110_300 Hb_001268_120 Hb_001268_120 Hb_000699_230--Hb_001268_120 Hb_000699_230--Hb_000625_090 Hb_009193_100 Hb_009193_100 Hb_000699_230--Hb_009193_100 Hb_000699_230--Hb_002915_060 Hb_001328_080 Hb_001328_080 Hb_002915_060--Hb_001328_080 Hb_007839_020 Hb_007839_020 Hb_002915_060--Hb_007839_020 Hb_011360_050 Hb_011360_050 Hb_002915_060--Hb_011360_050 Hb_005215_020 Hb_005215_020 Hb_002915_060--Hb_005215_020 Hb_023344_150 Hb_023344_150 Hb_002915_060--Hb_023344_150 Hb_002982_020 Hb_002982_020 Hb_002915_060--Hb_002982_020 Hb_000625_090--Hb_002915_060 Hb_013057_020 Hb_013057_020 Hb_000625_090--Hb_013057_020 Hb_006006_040 Hb_006006_040 Hb_000625_090--Hb_006006_040 Hb_000227_160 Hb_000227_160 Hb_000625_090--Hb_000227_160 Hb_000625_090--Hb_000110_300 Hb_004631_210 Hb_004631_210 Hb_003327_070--Hb_004631_210 Hb_003327_070--Hb_000699_230 Hb_000152_320 Hb_000152_320 Hb_003327_070--Hb_000152_320 Hb_003327_070--Hb_009193_100 Hb_000152_330 Hb_000152_330 Hb_003327_070--Hb_000152_330 Hb_000684_040 Hb_000684_040 Hb_000490_060--Hb_000684_040 Hb_003528_050 Hb_003528_050 Hb_000490_060--Hb_003528_050 Hb_020178_040 Hb_020178_040 Hb_000490_060--Hb_020178_040 Hb_006970_050 Hb_006970_050 Hb_000490_060--Hb_006970_050 Hb_003228_110 Hb_003228_110 Hb_000490_060--Hb_003228_110 Hb_050847_050 Hb_050847_050 Hb_000490_060--Hb_050847_050 Hb_073171_100 Hb_073171_100 Hb_006501_160--Hb_073171_100 Hb_000347_450 Hb_000347_450 Hb_006501_160--Hb_000347_450 Hb_000302_200 Hb_000302_200 Hb_006501_160--Hb_000302_200 Hb_028960_030 Hb_028960_030 Hb_006501_160--Hb_028960_030 Hb_001269_380 Hb_001269_380 Hb_006501_160--Hb_001269_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.04699 16.2936 5.91983 12.0873 4.33347 3.10443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.70074 7.23932 8.07399 13.9464 7.31448

CAGE analysis