Hb_000997_190

Information

Type -
Description -
Location Contig997: 172108-187348
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16130g
description POPTRDRAFT_766426; magnesium transporter CorA-like family protein
nr
ID XP_012069762.1
description PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
swissprot
ID Q9FLG2
description Magnesium transporter MRS2-2 OS=Arabidopsis thaliana GN=MRS2-2 PE=2 SV=1
trembl
ID A0A067KVR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02274 PE=4 SV=1
Gene Ontology
ID GO:0016020
description magnesium transporter mrs2-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64873: 177545-187338 , PASA_asmbl_64874: 188162-188506
cDNA
(Sanger)
(ID:Location)		 052_D04.ab1: 185985-187336

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_190 0.0 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
2 Hb_001172_120 0.1041576875 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
3 Hb_006006_050 0.1123555221 - - PREDICTED: methylthioribose kinase-like [Gossypium raimondii]
4 Hb_001235_110 0.1234457055 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
5 Hb_006478_160 0.1253553295 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
6 Hb_000567_410 0.1266496638 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
7 Hb_002231_030 0.1277316007 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
8 Hb_007037_020 0.1283428989 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
9 Hb_000788_010 0.1299464724 - - 40S ribosomal protein S16A [Hevea brasiliensis]
10 Hb_000140_360 0.130906084 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
11 Hb_147752_010 0.1319981481 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
12 Hb_000069_700 0.1324319614 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
13 Hb_183612_060 0.1371576161 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
14 Hb_000302_290 0.1390418642 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
15 Hb_000330_070 0.1410215764 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
16 Hb_005015_030 0.1411654376 - - PREDICTED: uncharacterized protein LOC105636546 [Jatropha curcas]
17 Hb_000878_020 0.1420643828 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
18 Hb_003326_020 0.142120285 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
19 Hb_002811_080 0.1423813584 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
20 Hb_002260_010 0.1429968629 - - PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]

Gene co-expression network

sample Hb_000997_190 Hb_000997_190 Hb_001172_120 Hb_001172_120 Hb_000997_190--Hb_001172_120 Hb_006006_050 Hb_006006_050 Hb_000997_190--Hb_006006_050 Hb_001235_110 Hb_001235_110 Hb_000997_190--Hb_001235_110 Hb_006478_160 Hb_006478_160 Hb_000997_190--Hb_006478_160 Hb_000567_410 Hb_000567_410 Hb_000997_190--Hb_000567_410 Hb_002231_030 Hb_002231_030 Hb_000997_190--Hb_002231_030 Hb_000069_700 Hb_000069_700 Hb_001172_120--Hb_000069_700 Hb_007192_100 Hb_007192_100 Hb_001172_120--Hb_007192_100 Hb_007037_020 Hb_007037_020 Hb_001172_120--Hb_007037_020 Hb_000115_230 Hb_000115_230 Hb_001172_120--Hb_000115_230 Hb_001172_120--Hb_001235_110 Hb_011021_040 Hb_011021_040 Hb_001172_120--Hb_011021_040 Hb_001369_170 Hb_001369_170 Hb_006006_050--Hb_001369_170 Hb_000788_010 Hb_000788_010 Hb_006006_050--Hb_000788_010 Hb_001225_010 Hb_001225_010 Hb_006006_050--Hb_001225_010 Hb_000282_070 Hb_000282_070 Hb_006006_050--Hb_000282_070 Hb_008772_010 Hb_008772_010 Hb_006006_050--Hb_008772_010 Hb_001235_110--Hb_000069_700 Hb_000330_070 Hb_000330_070 Hb_001235_110--Hb_000330_070 Hb_000802_100 Hb_000802_100 Hb_001235_110--Hb_000802_100 Hb_116349_110 Hb_116349_110 Hb_001235_110--Hb_116349_110 Hb_000975_320 Hb_000975_320 Hb_001235_110--Hb_000975_320 Hb_006478_160--Hb_000567_410 Hb_000731_190 Hb_000731_190 Hb_006478_160--Hb_000731_190 Hb_000093_110 Hb_000093_110 Hb_006478_160--Hb_000093_110 Hb_000735_040 Hb_000735_040 Hb_006478_160--Hb_000735_040 Hb_006478_160--Hb_000788_010 Hb_008921_020 Hb_008921_020 Hb_006478_160--Hb_008921_020 Hb_001085_270 Hb_001085_270 Hb_000567_410--Hb_001085_270 Hb_000567_410--Hb_000093_110 Hb_001085_120 Hb_001085_120 Hb_000567_410--Hb_001085_120 Hb_002811_080 Hb_002811_080 Hb_000567_410--Hb_002811_080 Hb_005063_050 Hb_005063_050 Hb_000567_410--Hb_005063_050 Hb_007044_060 Hb_007044_060 Hb_002231_030--Hb_007044_060 Hb_003044_090 Hb_003044_090 Hb_002231_030--Hb_003044_090 Hb_000906_040 Hb_000906_040 Hb_002231_030--Hb_000906_040 Hb_000487_230 Hb_000487_230 Hb_002231_030--Hb_000487_230 Hb_000699_090 Hb_000699_090 Hb_002231_030--Hb_000699_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.1196 3.95623 4.87965 3.78705 2.06536 1.77903
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.54918 26.6719 13.3639 4.78313 4.12435

CAGE analysis