Hb_000997_250

Information

Type -
Description -
Location Contig997: 225881-235006
Sequence    

Annotation

kegg
ID rcu:RCOM_0909300
description Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative (EC:3.2.1.113)
nr
ID XP_012069756.1
description PREDICTED: probable alpha-mannosidase I MNS4 [Jatropha curcas]
swissprot
ID Q9FG93
description Probable alpha-mannosidase I MNS4 OS=Arabidopsis thaliana GN=MNS4 PE=2 SV=1
trembl
ID A0A067KVR0
description alpha-1,2-Mannosidase OS=Jatropha curcas GN=JCGZ_02269 PE=3 SV=1
Gene Ontology
ID GO:0016020
description probable alpha-mannosidase i mns4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64880: 225933-234836 , PASA_asmbl_64881: 235602-240433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_250 0.0 - - PREDICTED: probable alpha-mannosidase I MNS4 [Jatropha curcas]
2 Hb_002995_050 0.0993081557 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
3 Hb_002171_060 0.1058792585 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000419_020 0.112748411 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_006846_130 0.1244506005 - - PREDICTED: carbonyl reductase [NADPH] 1-like [Jatropha curcas]
6 Hb_014720_040 0.1266316606 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
7 Hb_000005_090 0.1270651574 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
8 Hb_000946_090 0.1272375213 - - PREDICTED: cyclin-C1-2-like isoform X2 [Jatropha curcas]
9 Hb_045003_010 0.1284437223 - - Stomatin-1, putative [Ricinus communis]
10 Hb_000261_160 0.1292204796 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X2 [Jatropha curcas]
11 Hb_000155_160 0.1305479124 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
12 Hb_001931_010 0.1312585042 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
13 Hb_155215_020 0.1313368646 - - PREDICTED: RNA-binding protein pno1-like [Populus euphratica]
14 Hb_171900_060 0.1329575813 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
15 Hb_000327_230 0.1331193975 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
16 Hb_000599_260 0.1332551198 - - Vacuolar protein sorting-associated protein 2 like 3 [Glycine soja]
17 Hb_002609_200 0.1351965322 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_007747_050 0.1357273491 - - Peptidyl-prolyl cis-trans isomerase cypE, putative [Ricinus communis]
19 Hb_015299_030 0.1363623201 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
20 Hb_000110_250 0.136398812 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000997_250 Hb_000997_250 Hb_002995_050 Hb_002995_050 Hb_000997_250--Hb_002995_050 Hb_002171_060 Hb_002171_060 Hb_000997_250--Hb_002171_060 Hb_000419_020 Hb_000419_020 Hb_000997_250--Hb_000419_020 Hb_006846_130 Hb_006846_130 Hb_000997_250--Hb_006846_130 Hb_014720_040 Hb_014720_040 Hb_000997_250--Hb_014720_040 Hb_000005_090 Hb_000005_090 Hb_000997_250--Hb_000005_090 Hb_001489_110 Hb_001489_110 Hb_002995_050--Hb_001489_110 Hb_001269_190 Hb_001269_190 Hb_002995_050--Hb_001269_190 Hb_000384_070 Hb_000384_070 Hb_002995_050--Hb_000384_070 Hb_045003_010 Hb_045003_010 Hb_002995_050--Hb_045003_010 Hb_000087_070 Hb_000087_070 Hb_002995_050--Hb_000087_070 Hb_001353_010 Hb_001353_010 Hb_002995_050--Hb_001353_010 Hb_161574_020 Hb_161574_020 Hb_002171_060--Hb_161574_020 Hb_000261_160 Hb_000261_160 Hb_002171_060--Hb_000261_160 Hb_007878_010 Hb_007878_010 Hb_002171_060--Hb_007878_010 Hb_001931_010 Hb_001931_010 Hb_002171_060--Hb_001931_010 Hb_000390_300 Hb_000390_300 Hb_002171_060--Hb_000390_300 Hb_002171_060--Hb_000005_090 Hb_007747_050 Hb_007747_050 Hb_000419_020--Hb_007747_050 Hb_000136_260 Hb_000136_260 Hb_000419_020--Hb_000136_260 Hb_000155_160 Hb_000155_160 Hb_000419_020--Hb_000155_160 Hb_002811_170 Hb_002811_170 Hb_000419_020--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_000419_020--Hb_000946_090 Hb_004586_420 Hb_004586_420 Hb_000419_020--Hb_004586_420 Hb_002301_150 Hb_002301_150 Hb_006846_130--Hb_002301_150 Hb_000076_220 Hb_000076_220 Hb_006846_130--Hb_000076_220 Hb_000130_270 Hb_000130_270 Hb_006846_130--Hb_000130_270 Hb_006573_190 Hb_006573_190 Hb_006846_130--Hb_006573_190 Hb_003582_060 Hb_003582_060 Hb_006846_130--Hb_003582_060 Hb_006846_130--Hb_001931_010 Hb_001016_150 Hb_001016_150 Hb_014720_040--Hb_001016_150 Hb_005667_040 Hb_005667_040 Hb_014720_040--Hb_005667_040 Hb_003894_070 Hb_003894_070 Hb_014720_040--Hb_003894_070 Hb_000836_470 Hb_000836_470 Hb_014720_040--Hb_000836_470 Hb_014720_040--Hb_000005_090 Hb_004709_010 Hb_004709_010 Hb_014720_040--Hb_004709_010 Hb_000001_060 Hb_000001_060 Hb_000005_090--Hb_000001_060 Hb_004108_070 Hb_004108_070 Hb_000005_090--Hb_004108_070 Hb_002105_100 Hb_002105_100 Hb_000005_090--Hb_002105_100 Hb_006693_020 Hb_006693_020 Hb_000005_090--Hb_006693_020 Hb_004127_020 Hb_004127_020 Hb_000005_090--Hb_004127_020 Hb_004899_370 Hb_004899_370 Hb_000005_090--Hb_004899_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.07399 5.29241 7.90967 14.4468 3.62184 6.0455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.88071 21.8694 4.49531 5.15325 9.86447

CAGE analysis