Hb_000997_260

Information

Type -
Description -
Location Contig997: 236110-240522
Sequence    

Annotation

kegg
ID rcu:RCOM_0909310
description hypothetical protein
nr
ID XP_012069752.1
description PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
swissprot
ID Q09867
description rRNA-processing protein efg1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=efg1 PE=3 SV=2
trembl
ID A0A067L706
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02268 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64881: 235602-240433 , PASA_asmbl_64882: 236258-240433 , PASA_asmbl_64883: 239011-240433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_260 0.0 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
2 Hb_019516_040 0.0807854889 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
3 Hb_003636_090 0.1131012076 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
4 Hb_002518_250 0.1187496084 - - conserved hypothetical protein 10 [Hevea brasiliensis]
5 Hb_001140_160 0.1222996895 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
6 Hb_000933_140 0.1250066921 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
7 Hb_000085_340 0.1272681876 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
8 Hb_000762_020 0.1296225531 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
9 Hb_002078_430 0.1324354257 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
10 Hb_001493_100 0.1329617117 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
11 Hb_000175_520 0.1363032545 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_004738_090 0.1378664959 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001437_040 0.1384640166 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
14 Hb_000510_100 0.1389449223 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
15 Hb_005488_100 0.1397323976 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
16 Hb_003055_050 0.1429045796 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
17 Hb_003453_010 0.1455995422 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002759_250 0.1480842612 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
19 Hb_001017_090 0.1484540939 - - -
20 Hb_008408_030 0.148496451 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000997_260 Hb_000997_260 Hb_019516_040 Hb_019516_040 Hb_000997_260--Hb_019516_040 Hb_003636_090 Hb_003636_090 Hb_000997_260--Hb_003636_090 Hb_002518_250 Hb_002518_250 Hb_000997_260--Hb_002518_250 Hb_001140_160 Hb_001140_160 Hb_000997_260--Hb_001140_160 Hb_000933_140 Hb_000933_140 Hb_000997_260--Hb_000933_140 Hb_000085_340 Hb_000085_340 Hb_000997_260--Hb_000085_340 Hb_000510_100 Hb_000510_100 Hb_019516_040--Hb_000510_100 Hb_000762_020 Hb_000762_020 Hb_019516_040--Hb_000762_020 Hb_003745_010 Hb_003745_010 Hb_019516_040--Hb_003745_010 Hb_019516_040--Hb_001140_160 Hb_000920_140 Hb_000920_140 Hb_019516_040--Hb_000920_140 Hb_002875_090 Hb_002875_090 Hb_003636_090--Hb_002875_090 Hb_004738_090 Hb_004738_090 Hb_003636_090--Hb_004738_090 Hb_003636_090--Hb_000085_340 Hb_002067_160 Hb_002067_160 Hb_003636_090--Hb_002067_160 Hb_000270_400 Hb_000270_400 Hb_003636_090--Hb_000270_400 Hb_000175_520 Hb_000175_520 Hb_002518_250--Hb_000175_520 Hb_003453_010 Hb_003453_010 Hb_002518_250--Hb_003453_010 Hb_001437_040 Hb_001437_040 Hb_002518_250--Hb_001437_040 Hb_002518_250--Hb_000933_140 Hb_017895_050 Hb_017895_050 Hb_002518_250--Hb_017895_050 Hb_004852_020 Hb_004852_020 Hb_002518_250--Hb_004852_020 Hb_000957_040 Hb_000957_040 Hb_001140_160--Hb_000957_040 Hb_001140_160--Hb_000762_020 Hb_001140_160--Hb_004738_090 Hb_003018_180 Hb_003018_180 Hb_001140_160--Hb_003018_180 Hb_012347_010 Hb_012347_010 Hb_001140_160--Hb_012347_010 Hb_000500_310 Hb_000500_310 Hb_001140_160--Hb_000500_310 Hb_008016_010 Hb_008016_010 Hb_000933_140--Hb_008016_010 Hb_026048_090 Hb_026048_090 Hb_000933_140--Hb_026048_090 Hb_000933_140--Hb_001437_040 Hb_007992_030 Hb_007992_030 Hb_000933_140--Hb_007992_030 Hb_098709_010 Hb_098709_010 Hb_000933_140--Hb_098709_010 Hb_000085_340--Hb_002067_160 Hb_005754_020 Hb_005754_020 Hb_000085_340--Hb_005754_020 Hb_002391_110 Hb_002391_110 Hb_000085_340--Hb_002391_110 Hb_002377_040 Hb_002377_040 Hb_000085_340--Hb_002377_040 Hb_000085_340--Hb_026048_090 Hb_000176_140 Hb_000176_140 Hb_000085_340--Hb_000176_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
435.488 13.394 19.6029 15.0338 191.081 362.626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
398.768 169.366 131.548 24.6599 15.8114

CAGE analysis