Hb_000997_270

Information

Type -
Description -
Location Contig997: 242293-254220
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16060g
description POPTRDRAFT_564910; hypothetical protein
nr
ID XP_012069751.1
description PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
swissprot
ID Q940Y9
description Putative ion channel POLLUX-like 2 OS=Arabidopsis thaliana GN=At5g43745 PE=2 SV=1
trembl
ID B9HKD4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s16060g PE=4 SV=2
Gene Ontology
ID GO:0008324
description ion channel pollux-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64884: 242427-254130 , PASA_asmbl_64885: 251446-251641
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_270 0.0 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
2 Hb_002226_030 0.0849745385 - - PREDICTED: high affinity nitrate transporter 2.7 [Jatropha curcas]
3 Hb_005829_010 0.1201987045 - - PREDICTED: uncharacterized protein LOC105640979 [Jatropha curcas]
4 Hb_003376_100 0.1271734372 - - PREDICTED: uncharacterized protein LOC105642192 [Jatropha curcas]
5 Hb_001616_080 0.1335156146 - - Oleoyl-acyl carrier protein thioesterase, putative [Ricinus communis]
6 Hb_002284_090 0.1354311907 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
7 Hb_000127_010 0.1413731255 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]
8 Hb_017098_030 0.1417933598 - - hypothetical protein POPTR_0001s03560g [Populus trichocarpa]
9 Hb_101832_010 0.1433224795 - - nitrate transporter, putative [Ricinus communis]
10 Hb_076787_010 0.1455630892 - - PREDICTED: phospholipase SGR2 isoform X2 [Jatropha curcas]
11 Hb_000085_060 0.1461540158 - - PREDICTED: uncharacterized protein LOC105633020 [Jatropha curcas]
12 Hb_001053_180 0.1475233145 - - protein binding protein, putative [Ricinus communis]
13 Hb_012675_090 0.1517532042 - - PREDICTED: DNA-directed RNA polymerase II subunit 4-like isoform X1 [Citrus sinensis]
14 Hb_000922_330 0.153255872 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
15 Hb_000189_310 0.1532807332 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
16 Hb_000345_390 0.1536697683 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
17 Hb_000789_090 0.1536929983 - - hypothetical protein 17 [Hevea brasiliensis]
18 Hb_000270_360 0.1544427081 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
19 Hb_000041_080 0.1548243024 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
20 Hb_000003_650 0.1557096653 - - malic enzyme, putative [Ricinus communis]

Gene co-expression network

sample Hb_000997_270 Hb_000997_270 Hb_002226_030 Hb_002226_030 Hb_000997_270--Hb_002226_030 Hb_005829_010 Hb_005829_010 Hb_000997_270--Hb_005829_010 Hb_003376_100 Hb_003376_100 Hb_000997_270--Hb_003376_100 Hb_001616_080 Hb_001616_080 Hb_000997_270--Hb_001616_080 Hb_002284_090 Hb_002284_090 Hb_000997_270--Hb_002284_090 Hb_000127_010 Hb_000127_010 Hb_000997_270--Hb_000127_010 Hb_101832_010 Hb_101832_010 Hb_002226_030--Hb_101832_010 Hb_002226_030--Hb_000127_010 Hb_002111_050 Hb_002111_050 Hb_002226_030--Hb_002111_050 Hb_000041_080 Hb_000041_080 Hb_002226_030--Hb_000041_080 Hb_002226_030--Hb_003376_100 Hb_000085_060 Hb_000085_060 Hb_005829_010--Hb_000085_060 Hb_005829_010--Hb_003376_100 Hb_001124_120 Hb_001124_120 Hb_005829_010--Hb_001124_120 Hb_134364_010 Hb_134364_010 Hb_005829_010--Hb_134364_010 Hb_000922_330 Hb_000922_330 Hb_005829_010--Hb_000922_330 Hb_008253_010 Hb_008253_010 Hb_005829_010--Hb_008253_010 Hb_000265_150 Hb_000265_150 Hb_003376_100--Hb_000265_150 Hb_003376_100--Hb_000085_060 Hb_002716_150 Hb_002716_150 Hb_003376_100--Hb_002716_150 Hb_000205_120 Hb_000205_120 Hb_003376_100--Hb_000205_120 Hb_076787_010 Hb_076787_010 Hb_003376_100--Hb_076787_010 Hb_000189_310 Hb_000189_310 Hb_001616_080--Hb_000189_310 Hb_014720_160 Hb_014720_160 Hb_001616_080--Hb_014720_160 Hb_001616_080--Hb_000922_330 Hb_003069_010 Hb_003069_010 Hb_001616_080--Hb_003069_010 Hb_001357_090 Hb_001357_090 Hb_001616_080--Hb_001357_090 Hb_012627_050 Hb_012627_050 Hb_001616_080--Hb_012627_050 Hb_003398_130 Hb_003398_130 Hb_002284_090--Hb_003398_130 Hb_001278_110 Hb_001278_110 Hb_002284_090--Hb_001278_110 Hb_005306_170 Hb_005306_170 Hb_002284_090--Hb_005306_170 Hb_000392_440 Hb_000392_440 Hb_002284_090--Hb_000392_440 Hb_000486_010 Hb_000486_010 Hb_002284_090--Hb_000486_010 Hb_000887_020 Hb_000887_020 Hb_002284_090--Hb_000887_020 Hb_024682_010 Hb_024682_010 Hb_000127_010--Hb_024682_010 Hb_000127_010--Hb_000887_020 Hb_008175_040 Hb_008175_040 Hb_000127_010--Hb_008175_040 Hb_000251_070 Hb_000251_070 Hb_000127_010--Hb_000251_070 Hb_000454_050 Hb_000454_050 Hb_000127_010--Hb_000454_050 Hb_001053_180 Hb_001053_180 Hb_000127_010--Hb_001053_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.8826 7.46608 28.2327 7.7219 49.6891 50.2176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.8232 41.9652 24.6109 7.13456 30.7031

CAGE analysis