Hb_000997_330

Information

Type -
Description -
Location Contig997: 294582-296988
Sequence    

Annotation

kegg
ID pop:POPTR_0010s08940g
description hypothetical protein
nr
ID XP_006378364.1
description hypothetical protein POPTR_0010s08940g [Populus trichocarpa]
swissprot
ID Q9LS88
description Pentatricopeptide repeat-containing protein At3g23020 OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
trembl
ID U5G1R3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s08940g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64888: 292477-293844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_330 0.0 - - hypothetical protein POPTR_0010s08940g [Populus trichocarpa]
2 Hb_081504_010 0.1474316645 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
3 Hb_161072_020 0.1636126125 - - -
4 Hb_001364_040 0.163736338 - - -
5 Hb_004157_120 0.1792689821 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
6 Hb_143766_100 0.2179577966 - - PREDICTED: uncharacterized protein LOC105637800 [Jatropha curcas]
7 Hb_002400_090 0.219124465 - - -
8 Hb_000387_100 0.2301487949 - - -
9 Hb_001143_090 0.237408536 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
10 Hb_012395_210 0.2443605361 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004453_140 0.2484346543 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
12 Hb_010710_050 0.2486025861 - - -
13 Hb_000363_010 0.253706928 - - -
14 Hb_012395_200 0.2538098526 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000567_250 0.2556890142 - - hypothetical protein B456_009G162000 [Gossypium raimondii]
16 Hb_000078_010 0.2588510352 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
17 Hb_001538_140 0.2603299974 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
18 Hb_000329_600 0.261429756 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
19 Hb_099069_010 0.2652297383 - - S-adenosyl-methionine-sterol-C- methyltransferase [Ricinus communis]
20 Hb_001396_220 0.2665289078 - - nuclear transport factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000997_330 Hb_000997_330 Hb_081504_010 Hb_081504_010 Hb_000997_330--Hb_081504_010 Hb_161072_020 Hb_161072_020 Hb_000997_330--Hb_161072_020 Hb_001364_040 Hb_001364_040 Hb_000997_330--Hb_001364_040 Hb_004157_120 Hb_004157_120 Hb_000997_330--Hb_004157_120 Hb_143766_100 Hb_143766_100 Hb_000997_330--Hb_143766_100 Hb_002400_090 Hb_002400_090 Hb_000997_330--Hb_002400_090 Hb_081504_010--Hb_004157_120 Hb_081504_010--Hb_161072_020 Hb_081504_010--Hb_143766_100 Hb_000098_220 Hb_000098_220 Hb_081504_010--Hb_000098_220 Hb_000115_050 Hb_000115_050 Hb_081504_010--Hb_000115_050 Hb_161072_020--Hb_004157_120 Hb_161072_020--Hb_002400_090 Hb_161072_020--Hb_001364_040 Hb_021888_130 Hb_021888_130 Hb_161072_020--Hb_021888_130 Hb_000988_040 Hb_000988_040 Hb_001364_040--Hb_000988_040 Hb_000193_240 Hb_000193_240 Hb_001364_040--Hb_000193_240 Hb_000638_020 Hb_000638_020 Hb_001364_040--Hb_000638_020 Hb_000832_230 Hb_000832_230 Hb_001364_040--Hb_000832_230 Hb_001143_090 Hb_001143_090 Hb_001364_040--Hb_001143_090 Hb_000340_340 Hb_000340_340 Hb_004157_120--Hb_000340_340 Hb_004157_120--Hb_001364_040 Hb_000186_340 Hb_000186_340 Hb_004157_120--Hb_000186_340 Hb_001258_140 Hb_001258_140 Hb_143766_100--Hb_001258_140 Hb_178968_170 Hb_178968_170 Hb_143766_100--Hb_178968_170 Hb_012395_210 Hb_012395_210 Hb_143766_100--Hb_012395_210 Hb_009838_040 Hb_009838_040 Hb_143766_100--Hb_009838_040 Hb_000281_230 Hb_000281_230 Hb_143766_100--Hb_000281_230 Hb_004223_260 Hb_004223_260 Hb_143766_100--Hb_004223_260 Hb_000329_600 Hb_000329_600 Hb_002400_090--Hb_000329_600 Hb_002400_090--Hb_021888_130 Hb_000603_220 Hb_000603_220 Hb_002400_090--Hb_000603_220 Hb_002374_460 Hb_002374_460 Hb_002400_090--Hb_002374_460 Hb_000330_170 Hb_000330_170 Hb_002400_090--Hb_000330_170 Hb_005935_010 Hb_005935_010 Hb_002400_090--Hb_005935_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0250819 0.0385694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0589302 0.0463632 0.0872712 0.0184939 0

CAGE analysis