Hb_000997_360

Information

Type -
Description -
Location Contig997: 315317-316853
Sequence    

Annotation

kegg
ID ath:AT4G14615
description hypothetical protein
nr
ID KFK23656.1
description hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
swissprot
ID -
description -
trembl
ID A0A087G1A4
description Uncharacterized protein OS=Arabis alpina GN=AALP_AAs70636U000100 PE=4 SV=1
Gene Ontology
ID GO:0005643
description hypothetical protein AALP_AAs70636U000100

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64890: 315309-316288 , PASA_asmbl_64892: 315278-317010
cDNA
(Sanger)
(ID:Location)		 031_K13.ab1: 315278-317010 , 036_E08.ab1: 315278-317010 , 048_F06.ab1: 315278-316981

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_360 0.0 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
2 Hb_000125_210 0.1065629465 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
3 Hb_000635_210 0.1068129992 - - unknown [Populus trichocarpa]
4 Hb_001218_040 0.1128896467 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
5 Hb_021443_080 0.1240763604 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
6 Hb_001775_110 0.1254670782 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
7 Hb_011512_040 0.1262525452 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
8 Hb_168905_010 0.1267834397 - - PREDICTED: AP-1 complex subunit sigma-1 isoform X2 [Cicer arietinum]
9 Hb_001491_010 0.1272430484 - - PREDICTED: uncharacterized protein LOC105649805 [Jatropha curcas]
10 Hb_000096_150 0.1325122514 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
11 Hb_009393_210 0.134476803 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
12 Hb_161175_010 0.1355520608 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
13 Hb_009113_070 0.1363459975 - - hypothetical protein POPTR_0010s07510g [Populus trichocarpa]
14 Hb_001153_020 0.1367122931 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
15 Hb_003349_080 0.1368743502 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
16 Hb_001904_090 0.1373220012 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
17 Hb_011671_460 0.1382475298 - - PREDICTED: ankyrin repeat-containing protein At3g12360 [Jatropha curcas]
18 Hb_000224_140 0.1401074471 - - ribonuclease z, chloroplast, putative [Ricinus communis]
19 Hb_011909_100 0.1401944971 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000318_160 0.1414089564 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]

Gene co-expression network

sample Hb_000997_360 Hb_000997_360 Hb_000125_210 Hb_000125_210 Hb_000997_360--Hb_000125_210 Hb_000635_210 Hb_000635_210 Hb_000997_360--Hb_000635_210 Hb_001218_040 Hb_001218_040 Hb_000997_360--Hb_001218_040 Hb_021443_080 Hb_021443_080 Hb_000997_360--Hb_021443_080 Hb_001775_110 Hb_001775_110 Hb_000997_360--Hb_001775_110 Hb_011512_040 Hb_011512_040 Hb_000997_360--Hb_011512_040 Hb_000673_020 Hb_000673_020 Hb_000125_210--Hb_000673_020 Hb_161175_010 Hb_161175_010 Hb_000125_210--Hb_161175_010 Hb_000096_150 Hb_000096_150 Hb_000125_210--Hb_000096_150 Hb_000318_160 Hb_000318_160 Hb_000125_210--Hb_000318_160 Hb_003349_080 Hb_003349_080 Hb_000125_210--Hb_003349_080 Hb_000175_030 Hb_000175_030 Hb_000125_210--Hb_000175_030 Hb_001076_020 Hb_001076_020 Hb_000635_210--Hb_001076_020 Hb_000224_140 Hb_000224_140 Hb_000635_210--Hb_000224_140 Hb_000817_030 Hb_000817_030 Hb_000635_210--Hb_000817_030 Hb_002742_090 Hb_002742_090 Hb_000635_210--Hb_002742_090 Hb_000635_210--Hb_000096_150 Hb_001396_100 Hb_001396_100 Hb_001218_040--Hb_001396_100 Hb_001218_040--Hb_000224_140 Hb_001904_090 Hb_001904_090 Hb_001218_040--Hb_001904_090 Hb_001218_040--Hb_003349_080 Hb_001616_030 Hb_001616_030 Hb_001218_040--Hb_001616_030 Hb_000680_140 Hb_000680_140 Hb_001218_040--Hb_000680_140 Hb_012291_030 Hb_012291_030 Hb_021443_080--Hb_012291_030 Hb_001153_020 Hb_001153_020 Hb_021443_080--Hb_001153_020 Hb_021443_080--Hb_001775_110 Hb_000398_040 Hb_000398_040 Hb_021443_080--Hb_000398_040 Hb_001314_040 Hb_001314_040 Hb_021443_080--Hb_001314_040 Hb_168905_010 Hb_168905_010 Hb_021443_080--Hb_168905_010 Hb_001775_110--Hb_000398_040 Hb_001083_020 Hb_001083_020 Hb_001775_110--Hb_001083_020 Hb_000046_290 Hb_000046_290 Hb_001775_110--Hb_000046_290 Hb_001360_050 Hb_001360_050 Hb_001775_110--Hb_001360_050 Hb_011909_100 Hb_011909_100 Hb_001775_110--Hb_011909_100 Hb_114336_020 Hb_114336_020 Hb_001775_110--Hb_114336_020 Hb_017225_020 Hb_017225_020 Hb_011512_040--Hb_017225_020 Hb_005446_010 Hb_005446_010 Hb_011512_040--Hb_005446_010 Hb_000853_190 Hb_000853_190 Hb_011512_040--Hb_000853_190 Hb_000419_070 Hb_000419_070 Hb_011512_040--Hb_000419_070 Hb_003849_150 Hb_003849_150 Hb_011512_040--Hb_003849_150 Hb_010883_050 Hb_010883_050 Hb_011512_040--Hb_010883_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.2197 6.05796 18.1736 20.4848 28.4527 17.5749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.4128 71.8235 85.3297 33.7861 61.5198

CAGE analysis