Hb_000997_370

Information

Type -
Description -
Location Contig997: 318606-321268
Sequence    

Annotation

kegg
ID rcu:RCOM_0909590
description acyltransferase, putative
nr
ID XP_012069740.1
description PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
swissprot
ID Q5XEP9
description 3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2
trembl
ID A0A067KZ98
description 3-ketoacyl-CoA synthase OS=Jatropha curcas GN=JCGZ_02261 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64893: 318669-321211
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_370 0.0 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
2 Hb_002081_140 0.0875659436 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000254_080 0.0900938472 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
4 Hb_002119_150 0.1075250606 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
5 Hb_004837_080 0.1096005276 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46 [Jatropha curcas]
6 Hb_000538_110 0.1098215004 - - sucrose synthase 1 [Hevea brasiliensis]
7 Hb_029386_010 0.1108542709 - - RALF-LIKE 27 family protein [Populus trichocarpa]
8 Hb_002675_220 0.1130603002 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
9 Hb_000122_230 0.114927323 - - laccase, putative [Ricinus communis]
10 Hb_102761_010 0.1149317494 - - hypothetical protein JCGZ_21614 [Jatropha curcas]
11 Hb_001104_070 0.1150249914 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
12 Hb_000343_090 0.1183741994 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
13 Hb_004530_010 0.1193454045 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
14 Hb_011214_080 0.1214147159 - - sucrose synthase 1 [Hevea brasiliensis]
15 Hb_080048_030 0.1214817934 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
16 Hb_000155_230 0.1218206566 - - rac gtpase, putative [Ricinus communis]
17 Hb_003358_030 0.1218273944 - - ankyrin-kinase, putative [Ricinus communis]
18 Hb_001488_160 0.1241337679 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
19 Hb_005539_150 0.1244084756 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]
20 Hb_008714_030 0.1252101283 - - Multidrug resistance protein ABC transporter family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000997_370 Hb_000997_370 Hb_002081_140 Hb_002081_140 Hb_000997_370--Hb_002081_140 Hb_000254_080 Hb_000254_080 Hb_000997_370--Hb_000254_080 Hb_002119_150 Hb_002119_150 Hb_000997_370--Hb_002119_150 Hb_004837_080 Hb_004837_080 Hb_000997_370--Hb_004837_080 Hb_000538_110 Hb_000538_110 Hb_000997_370--Hb_000538_110 Hb_029386_010 Hb_029386_010 Hb_000997_370--Hb_029386_010 Hb_004329_030 Hb_004329_030 Hb_002081_140--Hb_004329_030 Hb_001051_020 Hb_001051_020 Hb_002081_140--Hb_001051_020 Hb_002675_220 Hb_002675_220 Hb_002081_140--Hb_002675_220 Hb_003253_030 Hb_003253_030 Hb_002081_140--Hb_003253_030 Hb_034299_010 Hb_034299_010 Hb_002081_140--Hb_034299_010 Hb_000254_080--Hb_004837_080 Hb_000254_080--Hb_002119_150 Hb_000122_230 Hb_000122_230 Hb_000254_080--Hb_000122_230 Hb_001269_540 Hb_001269_540 Hb_000254_080--Hb_001269_540 Hb_080797_010 Hb_080797_010 Hb_000254_080--Hb_080797_010 Hb_002119_150--Hb_004837_080 Hb_002119_150--Hb_001269_540 Hb_002119_150--Hb_000538_110 Hb_000260_520 Hb_000260_520 Hb_002119_150--Hb_000260_520 Hb_002119_150--Hb_080797_010 Hb_004837_080--Hb_001269_540 Hb_004837_080--Hb_080797_010 Hb_007620_020 Hb_007620_020 Hb_004837_080--Hb_007620_020 Hb_004837_080--Hb_000122_230 Hb_001097_030 Hb_001097_030 Hb_000538_110--Hb_001097_030 Hb_011214_080 Hb_011214_080 Hb_000538_110--Hb_011214_080 Hb_005062_100 Hb_005062_100 Hb_000538_110--Hb_005062_100 Hb_000029_210 Hb_000029_210 Hb_000538_110--Hb_000029_210 Hb_012760_120 Hb_012760_120 Hb_000538_110--Hb_012760_120 Hb_003358_030 Hb_003358_030 Hb_029386_010--Hb_003358_030 Hb_005539_150 Hb_005539_150 Hb_029386_010--Hb_005539_150 Hb_000477_090 Hb_000477_090 Hb_029386_010--Hb_000477_090 Hb_000627_110 Hb_000627_110 Hb_029386_010--Hb_000627_110 Hb_000223_090 Hb_000223_090 Hb_029386_010--Hb_000223_090 Hb_004896_030 Hb_004896_030 Hb_029386_010--Hb_004896_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0210347 2.30767 8.08659 39.7785 0.328973 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.042675 0 0 5.78843 96.9704

CAGE analysis