Hb_000997_380

Information

Type -
Description -
Location Contig997: 330151-334020
Sequence    

Annotation

kegg
ID pop:POPTR_0008s15980g
description POPTRDRAFT_832828; hypothetical protein
nr
ID XP_012069739.1
description PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
swissprot
ID Q9LS90
description Armadillo repeat-containing protein LFR OS=Arabidopsis thaliana GN=LFR PE=2 SV=1
trembl
ID A0A067KVQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02259 PE=4 SV=1
Gene Ontology
ID GO:0005488
description armadillo repeat-containing protein lfr

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_380 0.0 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
2 Hb_017002_010 0.2032120224 - - PREDICTED: expansin-A15-like [Jatropha curcas]
3 Hb_004525_050 0.2040977986 - - similar to Drosophila melanogaster CG10960, partial [Drosophila yakuba]
4 Hb_005144_170 0.2129670431 - - PREDICTED: shugoshin-1-like isoform X2 [Jatropha curcas]
5 Hb_001449_030 0.2173398474 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Jatropha curcas]
6 Hb_010984_040 0.2180245753 - - hypothetical protein M569_17286, partial [Genlisea aurea]
7 Hb_006634_110 0.2225665054 - - BnaC04g40780D [Brassica napus]
8 Hb_000950_030 0.2293638823 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g10290 [Nelumbo nucifera]
9 Hb_178968_040 0.2304326924 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000720_080 0.2332443621 - - PREDICTED: bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Jatropha curcas]
11 Hb_001584_240 0.2349158484 - - ADP-ribosylation factor [Gossypium barbadense]
12 Hb_002760_050 0.235418367 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000622_350 0.2359116875 - - PREDICTED: protein ABIL1 [Jatropha curcas]
14 Hb_008185_020 0.2363198885 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
15 Hb_000294_050 0.236509644 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
16 Hb_002498_260 0.2379417516 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
17 Hb_001143_230 0.2411131083 - - beta-galactosidase family protein [Populus trichocarpa]
18 Hb_001004_080 0.2412675394 - - hypothetical protein POPTR_0014s14130g [Populus trichocarpa]
19 Hb_004079_050 0.2418824028 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
20 Hb_122636_010 0.2421802293 - - dienelactone hydrolase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000997_380 Hb_000997_380 Hb_017002_010 Hb_017002_010 Hb_000997_380--Hb_017002_010 Hb_004525_050 Hb_004525_050 Hb_000997_380--Hb_004525_050 Hb_005144_170 Hb_005144_170 Hb_000997_380--Hb_005144_170 Hb_001449_030 Hb_001449_030 Hb_000997_380--Hb_001449_030 Hb_010984_040 Hb_010984_040 Hb_000997_380--Hb_010984_040 Hb_006634_110 Hb_006634_110 Hb_000997_380--Hb_006634_110 Hb_014720_100 Hb_014720_100 Hb_017002_010--Hb_014720_100 Hb_008695_220 Hb_008695_220 Hb_017002_010--Hb_008695_220 Hb_178968_040 Hb_178968_040 Hb_017002_010--Hb_178968_040 Hb_007574_040 Hb_007574_040 Hb_017002_010--Hb_007574_040 Hb_001635_010 Hb_001635_010 Hb_017002_010--Hb_001635_010 Hb_004079_050 Hb_004079_050 Hb_017002_010--Hb_004079_050 Hb_004525_050--Hb_010984_040 Hb_002760_050 Hb_002760_050 Hb_004525_050--Hb_002760_050 Hb_048702_010 Hb_048702_010 Hb_004525_050--Hb_048702_010 Hb_100137_010 Hb_100137_010 Hb_004525_050--Hb_100137_010 Hb_004525_050--Hb_006634_110 Hb_000950_030 Hb_000950_030 Hb_004525_050--Hb_000950_030 Hb_004117_330 Hb_004117_330 Hb_005144_170--Hb_004117_330 Hb_000191_140 Hb_000191_140 Hb_005144_170--Hb_000191_140 Hb_001143_230 Hb_001143_230 Hb_005144_170--Hb_001143_230 Hb_002774_120 Hb_002774_120 Hb_005144_170--Hb_002774_120 Hb_002490_030 Hb_002490_030 Hb_005144_170--Hb_002490_030 Hb_000413_080 Hb_000413_080 Hb_005144_170--Hb_000413_080 Hb_002498_260 Hb_002498_260 Hb_001449_030--Hb_002498_260 Hb_001449_030--Hb_010984_040 Hb_001449_030--Hb_004525_050 Hb_000016_060 Hb_000016_060 Hb_001449_030--Hb_000016_060 Hb_000294_050 Hb_000294_050 Hb_001449_030--Hb_000294_050 Hb_010984_040--Hb_100137_010 Hb_010984_040--Hb_006634_110 Hb_009083_030 Hb_009083_030 Hb_010984_040--Hb_009083_030 Hb_010984_040--Hb_048702_010 Hb_121694_010 Hb_121694_010 Hb_010984_040--Hb_121694_010 Hb_122636_010 Hb_122636_010 Hb_006634_110--Hb_122636_010 Hb_006634_110--Hb_048702_010 Hb_006634_110--Hb_100137_010 Hb_010577_010 Hb_010577_010 Hb_006634_110--Hb_010577_010 Hb_053709_040 Hb_053709_040 Hb_006634_110--Hb_053709_040 Hb_000671_130 Hb_000671_130 Hb_006634_110--Hb_000671_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0342045 0 0.0479314 0.272223 0.0142736 0.0310633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0347495 0.0546739 0 0.0327795 0.0569569

CAGE analysis