Hb_000997_400

Information

Type -
Description -
Location Contig997: 340705-342309
Sequence    

Annotation

kegg
ID vvi:100263102
description pentatricopeptide repeat-containing protein At1g50270
nr
ID XP_012069737.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
swissprot
ID Q9SX45
description Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
trembl
ID A0A067L866
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02257 PE=4 SV=1
Gene Ontology
ID GO:0005739
description pentatricopeptide repeat-containing protein at1g50270

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_400 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
2 Hb_000297_200 0.0582921688 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
3 Hb_000059_220 0.0659920722 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
4 Hb_003018_190 0.0670928283 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
5 Hb_000482_010 0.0712443281 - - PREDICTED: probable ADP,ATP carrier protein At5g56450 [Jatropha curcas]
6 Hb_000457_150 0.076884453 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
7 Hb_010710_040 0.0773014757 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_006816_140 0.0798377316 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
9 Hb_004128_180 0.0807716693 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000019_130 0.0810997265 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
11 Hb_131864_040 0.0841769604 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
12 Hb_000614_230 0.0859272991 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
13 Hb_000836_070 0.0909231794 - - protein binding protein, putative [Ricinus communis]
14 Hb_007747_200 0.0921934003 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
15 Hb_003266_130 0.0926939935 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
16 Hb_000007_150 0.0931588897 - - PREDICTED: pentatricopeptide repeat-containing protein At2g41080 [Jatropha curcas]
17 Hb_005532_060 0.0934099401 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
18 Hb_002603_160 0.0945013459 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
19 Hb_001123_230 0.0945781271 - - PREDICTED: uncharacterized protein LOC105647321 [Jatropha curcas]
20 Hb_000236_140 0.0958473391 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000997_400 Hb_000997_400 Hb_000297_200 Hb_000297_200 Hb_000997_400--Hb_000297_200 Hb_000059_220 Hb_000059_220 Hb_000997_400--Hb_000059_220 Hb_003018_190 Hb_003018_190 Hb_000997_400--Hb_003018_190 Hb_000482_010 Hb_000482_010 Hb_000997_400--Hb_000482_010 Hb_000457_150 Hb_000457_150 Hb_000997_400--Hb_000457_150 Hb_010710_040 Hb_010710_040 Hb_000997_400--Hb_010710_040 Hb_000297_200--Hb_000457_150 Hb_029584_130 Hb_029584_130 Hb_000297_200--Hb_029584_130 Hb_000935_050 Hb_000935_050 Hb_000297_200--Hb_000935_050 Hb_000007_150 Hb_000007_150 Hb_000297_200--Hb_000007_150 Hb_000297_200--Hb_000059_220 Hb_006501_040 Hb_006501_040 Hb_000059_220--Hb_006501_040 Hb_000179_210 Hb_000179_210 Hb_000059_220--Hb_000179_210 Hb_178968_110 Hb_178968_110 Hb_000059_220--Hb_178968_110 Hb_000614_230 Hb_000614_230 Hb_000059_220--Hb_000614_230 Hb_131864_040 Hb_131864_040 Hb_003018_190--Hb_131864_040 Hb_002603_160 Hb_002603_160 Hb_003018_190--Hb_002603_160 Hb_001141_280 Hb_001141_280 Hb_003018_190--Hb_001141_280 Hb_005488_010 Hb_005488_010 Hb_003018_190--Hb_005488_010 Hb_006846_110 Hb_006846_110 Hb_003018_190--Hb_006846_110 Hb_006816_140 Hb_006816_140 Hb_000482_010--Hb_006816_140 Hb_000482_010--Hb_003018_190 Hb_001699_130 Hb_001699_130 Hb_000482_010--Hb_001699_130 Hb_000696_040 Hb_000696_040 Hb_000482_010--Hb_000696_040 Hb_010608_050 Hb_010608_050 Hb_000482_010--Hb_010608_050 Hb_005532_060 Hb_005532_060 Hb_000457_150--Hb_005532_060 Hb_000457_150--Hb_178968_110 Hb_055062_030 Hb_055062_030 Hb_000457_150--Hb_055062_030 Hb_000567_260 Hb_000567_260 Hb_000457_150--Hb_000567_260 Hb_000836_070 Hb_000836_070 Hb_010710_040--Hb_000836_070 Hb_010710_040--Hb_003018_190 Hb_010710_040--Hb_000457_150 Hb_000156_100 Hb_000156_100 Hb_010710_040--Hb_000156_100 Hb_010710_040--Hb_006846_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.34022 2.96826 0.657374 2.22315 3.66766 5.74394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.8841 6.93485 11.4771 1.94956 1.57399

CAGE analysis