Hb_000999_050

Information

Type -
Description -
Location Contig999: 113029-120445
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11310g
description POPTRDRAFT_835945; MIF4G domain-containing family protein
nr
ID XP_012071533.1
description PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
swissprot
ID Q93ZT6
description Eukaryotic translation initiation factor isoform 4G-1 OS=Arabidopsis thaliana GN=EIF(ISO)4G1 PE=1 SV=1
trembl
ID A0A067KR86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04054 PE=4 SV=1
Gene Ontology
ID GO:0003743
description mif4g domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64909: 113091-120401 , PASA_asmbl_64910: 117718-118070
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000999_050 0.0 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
2 Hb_004607_050 0.0387771783 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
3 Hb_004994_220 0.0743926302 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
4 Hb_004837_130 0.0784103269 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
5 Hb_002740_180 0.0813482213 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006938_080 0.0818329876 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
7 Hb_001009_170 0.0828007951 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_002481_080 0.0843499641 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
9 Hb_000977_110 0.0851040227 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Jatropha curcas]
10 Hb_001486_180 0.0853109873 - - hypothetical protein B456_007G260200 [Gossypium raimondii]
11 Hb_005490_030 0.0853926498 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
12 Hb_015175_020 0.0865331275 - - hypothetical protein JCGZ_14452 [Jatropha curcas]
13 Hb_000866_170 0.0872910042 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_002942_100 0.0901475222 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
15 Hb_000185_040 0.0902881789 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
16 Hb_000890_210 0.0912481474 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
17 Hb_000245_040 0.0930385227 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
18 Hb_000252_200 0.0949527594 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011485_070 0.095827533 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
20 Hb_003370_050 0.0964135511 - - PREDICTED: uncharacterized protein LOC103697550 [Phoenix dactylifera]

Gene co-expression network

sample Hb_000999_050 Hb_000999_050 Hb_004607_050 Hb_004607_050 Hb_000999_050--Hb_004607_050 Hb_004994_220 Hb_004994_220 Hb_000999_050--Hb_004994_220 Hb_004837_130 Hb_004837_130 Hb_000999_050--Hb_004837_130 Hb_002740_180 Hb_002740_180 Hb_000999_050--Hb_002740_180 Hb_006938_080 Hb_006938_080 Hb_000999_050--Hb_006938_080 Hb_001009_170 Hb_001009_170 Hb_000999_050--Hb_001009_170 Hb_000866_170 Hb_000866_170 Hb_004607_050--Hb_000866_170 Hb_005490_030 Hb_005490_030 Hb_004607_050--Hb_005490_030 Hb_002942_100 Hb_002942_100 Hb_004607_050--Hb_002942_100 Hb_000185_040 Hb_000185_040 Hb_004607_050--Hb_000185_040 Hb_004607_050--Hb_006938_080 Hb_002740_110 Hb_002740_110 Hb_004994_220--Hb_002740_110 Hb_001341_170 Hb_001341_170 Hb_004994_220--Hb_001341_170 Hb_010174_110 Hb_010174_110 Hb_004994_220--Hb_010174_110 Hb_000028_280 Hb_000028_280 Hb_004994_220--Hb_000028_280 Hb_000890_210 Hb_000890_210 Hb_004994_220--Hb_000890_210 Hb_000260_270 Hb_000260_270 Hb_004994_220--Hb_000260_270 Hb_000252_200 Hb_000252_200 Hb_004837_130--Hb_000252_200 Hb_004837_130--Hb_004607_050 Hb_002675_070 Hb_002675_070 Hb_004837_130--Hb_002675_070 Hb_000174_180 Hb_000174_180 Hb_004837_130--Hb_000174_180 Hb_011485_070 Hb_011485_070 Hb_004837_130--Hb_011485_070 Hb_005054_100 Hb_005054_100 Hb_002740_180--Hb_005054_100 Hb_002740_180--Hb_000185_040 Hb_054865_150 Hb_054865_150 Hb_002740_180--Hb_054865_150 Hb_000254_090 Hb_000254_090 Hb_002740_180--Hb_000254_090 Hb_000318_290 Hb_000318_290 Hb_002740_180--Hb_000318_290 Hb_000028_480 Hb_000028_480 Hb_002740_180--Hb_000028_480 Hb_000245_040 Hb_000245_040 Hb_006938_080--Hb_000245_040 Hb_002809_050 Hb_002809_050 Hb_006938_080--Hb_002809_050 Hb_000646_050 Hb_000646_050 Hb_006938_080--Hb_000646_050 Hb_006938_080--Hb_000866_170 Hb_000107_490 Hb_000107_490 Hb_006938_080--Hb_000107_490 Hb_000395_190 Hb_000395_190 Hb_006938_080--Hb_000395_190 Hb_001009_170--Hb_005490_030 Hb_004920_120 Hb_004920_120 Hb_001009_170--Hb_004920_120 Hb_001959_210 Hb_001959_210 Hb_001009_170--Hb_001959_210 Hb_011671_180 Hb_011671_180 Hb_001009_170--Hb_011671_180 Hb_001619_070 Hb_001619_070 Hb_001009_170--Hb_001619_070 Hb_007044_140 Hb_007044_140 Hb_001009_170--Hb_007044_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.4942 22.0319 10.8762 27.7724 28.4086 30.8789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.7233 23.9446 52.83 43.8095 26.4123

CAGE analysis