Hb_001001_030

Information

Type -
Description -
Location Contig1001: 21425-22387
Sequence    

Annotation

kegg
ID pop:POPTR_0014s03230g
description hypothetical protein
nr
ID XP_006374970.1
description hypothetical protein POPTR_0014s03230g [Populus trichocarpa]
swissprot
ID Q9SX78
description Probable carboxylesterase 2 OS=Arabidopsis thaliana GN=CXE2 PE=2 SV=1
trembl
ID B9MVM4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s03230g PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable carboxylesterase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001001_030 0.0 - - hypothetical protein POPTR_0014s03230g [Populus trichocarpa]
2 Hb_007336_040 0.1841885971 - - protein binding protein, putative [Ricinus communis]
3 Hb_001102_230 0.193183601 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Jatropha curcas]
4 Hb_005321_030 0.2241815159 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4 [Jatropha curcas]
5 Hb_002471_070 0.2356841665 - - Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
6 Hb_000107_410 0.2390776751 - - PREDICTED: expansin-A20 [Jatropha curcas]
7 Hb_007044_210 0.2417783574 transcription factor TF Family: MYB PREDICTED: protein rough sheath 2 homolog [Populus euphratica]
8 Hb_004286_040 0.2434154892 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH74 isoform X1 [Jatropha curcas]
9 Hb_000317_330 0.2459460408 - - PREDICTED: RNA-binding protein 38-like [Jatropha curcas]
10 Hb_005396_040 0.2461656422 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_006120_200 0.2463857281 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
12 Hb_010883_100 0.2465164987 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
13 Hb_000699_020 0.2512037146 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
14 Hb_027028_030 0.2535169992 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000481_020 0.2551573362 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
16 Hb_000472_040 0.2556184557 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
17 Hb_012366_040 0.2560438609 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Gossypium raimondii]
18 Hb_001357_140 0.2561184574 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000270_440 0.2563058028 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
20 Hb_004218_150 0.2580960971 - - electron transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001001_030 Hb_001001_030 Hb_007336_040 Hb_007336_040 Hb_001001_030--Hb_007336_040 Hb_001102_230 Hb_001102_230 Hb_001001_030--Hb_001102_230 Hb_005321_030 Hb_005321_030 Hb_001001_030--Hb_005321_030 Hb_002471_070 Hb_002471_070 Hb_001001_030--Hb_002471_070 Hb_000107_410 Hb_000107_410 Hb_001001_030--Hb_000107_410 Hb_007044_210 Hb_007044_210 Hb_001001_030--Hb_007044_210 Hb_003687_140 Hb_003687_140 Hb_007336_040--Hb_003687_140 Hb_000699_120 Hb_000699_120 Hb_007336_040--Hb_000699_120 Hb_029584_140 Hb_029584_140 Hb_007336_040--Hb_029584_140 Hb_012347_010 Hb_012347_010 Hb_007336_040--Hb_012347_010 Hb_002027_300 Hb_002027_300 Hb_007336_040--Hb_002027_300 Hb_001960_040 Hb_001960_040 Hb_001102_230--Hb_001960_040 Hb_000472_040 Hb_000472_040 Hb_001102_230--Hb_000472_040 Hb_000300_620 Hb_000300_620 Hb_001102_230--Hb_000300_620 Hb_000573_020 Hb_000573_020 Hb_001102_230--Hb_000573_020 Hb_001357_140 Hb_001357_140 Hb_001102_230--Hb_001357_140 Hb_000576_010 Hb_000576_010 Hb_001102_230--Hb_000576_010 Hb_000260_450 Hb_000260_450 Hb_005321_030--Hb_000260_450 Hb_001341_130 Hb_001341_130 Hb_005321_030--Hb_001341_130 Hb_055259_010 Hb_055259_010 Hb_005321_030--Hb_055259_010 Hb_010710_020 Hb_010710_020 Hb_005321_030--Hb_010710_020 Hb_026428_010 Hb_026428_010 Hb_005321_030--Hb_026428_010 Hb_000188_130 Hb_000188_130 Hb_005321_030--Hb_000188_130 Hb_003207_110 Hb_003207_110 Hb_002471_070--Hb_003207_110 Hb_005396_040 Hb_005396_040 Hb_002471_070--Hb_005396_040 Hb_000920_150 Hb_000920_150 Hb_002471_070--Hb_000920_150 Hb_002876_030 Hb_002876_030 Hb_002471_070--Hb_002876_030 Hb_023214_010 Hb_023214_010 Hb_002471_070--Hb_023214_010 Hb_001035_040 Hb_001035_040 Hb_002471_070--Hb_001035_040 Hb_000207_120 Hb_000207_120 Hb_000107_410--Hb_000207_120 Hb_033594_030 Hb_033594_030 Hb_000107_410--Hb_033594_030 Hb_002333_080 Hb_002333_080 Hb_000107_410--Hb_002333_080 Hb_001584_080 Hb_001584_080 Hb_000107_410--Hb_001584_080 Hb_004286_040 Hb_004286_040 Hb_000107_410--Hb_004286_040 Hb_002946_160 Hb_002946_160 Hb_000107_410--Hb_002946_160 Hb_004724_140 Hb_004724_140 Hb_007044_210--Hb_004724_140 Hb_000548_030 Hb_000548_030 Hb_007044_210--Hb_000548_030 Hb_001386_130 Hb_001386_130 Hb_007044_210--Hb_001386_130 Hb_000373_290 Hb_000373_290 Hb_007044_210--Hb_000373_290 Hb_000481_020 Hb_000481_020 Hb_007044_210--Hb_000481_020 Hb_002681_040 Hb_002681_040 Hb_007044_210--Hb_002681_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
87.9634 12.918 1.12663 16.502 9.3243 7.17465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.912 20.0128 29.4553 17.2718 1.36376

CAGE analysis