Hb_001001_060

Information

Type -
Description -
Location Contig1001: 55730-59885
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00218: 55782-57977 , PASA_asmbl_00220: 59723-59930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001001_060 0.0 - - -
2 Hb_000009_170 0.0683500372 - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase, putative [Ricinus communis]
3 Hb_004225_020 0.0770317447 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000120_800 0.0816399057 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
5 Hb_004204_020 0.0819013509 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
6 Hb_000190_140 0.0857237106 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
7 Hb_002027_120 0.0857330347 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
8 Hb_001017_040 0.0880378725 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
9 Hb_001295_020 0.0888241425 - - Uncharacterized protein TCM_027312 [Theobroma cacao]
10 Hb_006400_040 0.0896065105 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
11 Hb_002039_010 0.0926291752 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
12 Hb_005662_030 0.0947177748 - - protein with unknown function [Ricinus communis]
13 Hb_005730_030 0.0952605698 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
14 Hb_001584_330 0.0955791788 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
15 Hb_000244_250 0.0957438308 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
16 Hb_000620_010 0.0969110051 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
17 Hb_005306_110 0.0970751714 - - casein kinase, putative [Ricinus communis]
18 Hb_012760_170 0.0986525593 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
19 Hb_000300_280 0.0987980367 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
20 Hb_001771_140 0.0989168605 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001001_060 Hb_001001_060 Hb_000009_170 Hb_000009_170 Hb_001001_060--Hb_000009_170 Hb_004225_020 Hb_004225_020 Hb_001001_060--Hb_004225_020 Hb_000120_800 Hb_000120_800 Hb_001001_060--Hb_000120_800 Hb_004204_020 Hb_004204_020 Hb_001001_060--Hb_004204_020 Hb_000190_140 Hb_000190_140 Hb_001001_060--Hb_000190_140 Hb_002027_120 Hb_002027_120 Hb_001001_060--Hb_002027_120 Hb_000620_010 Hb_000620_010 Hb_000009_170--Hb_000620_010 Hb_009838_100 Hb_009838_100 Hb_000009_170--Hb_009838_100 Hb_000009_170--Hb_000120_800 Hb_022137_060 Hb_022137_060 Hb_000009_170--Hb_022137_060 Hb_000331_210 Hb_000331_210 Hb_000009_170--Hb_000331_210 Hb_000915_050 Hb_000915_050 Hb_004225_020--Hb_000915_050 Hb_002131_020 Hb_002131_020 Hb_004225_020--Hb_002131_020 Hb_004225_020--Hb_004204_020 Hb_001663_030 Hb_001663_030 Hb_004225_020--Hb_001663_030 Hb_001516_100 Hb_001516_100 Hb_004225_020--Hb_001516_100 Hb_001840_080 Hb_001840_080 Hb_000120_800--Hb_001840_080 Hb_005306_110 Hb_005306_110 Hb_000120_800--Hb_005306_110 Hb_001017_040 Hb_001017_040 Hb_000120_800--Hb_001017_040 Hb_000134_090 Hb_000134_090 Hb_000120_800--Hb_000134_090 Hb_000120_800--Hb_022137_060 Hb_000703_220 Hb_000703_220 Hb_004204_020--Hb_000703_220 Hb_002030_030 Hb_002030_030 Hb_004204_020--Hb_002030_030 Hb_002039_010 Hb_002039_010 Hb_004204_020--Hb_002039_010 Hb_000184_130 Hb_000184_130 Hb_004204_020--Hb_000184_130 Hb_003362_040 Hb_003362_040 Hb_004204_020--Hb_003362_040 Hb_090804_010 Hb_090804_010 Hb_004204_020--Hb_090804_010 Hb_000754_060 Hb_000754_060 Hb_000190_140--Hb_000754_060 Hb_000120_950 Hb_000120_950 Hb_000190_140--Hb_000120_950 Hb_009111_050 Hb_009111_050 Hb_000190_140--Hb_009111_050 Hb_001454_210 Hb_001454_210 Hb_000190_140--Hb_001454_210 Hb_005062_070 Hb_005062_070 Hb_000190_140--Hb_005062_070 Hb_015306_020 Hb_015306_020 Hb_000190_140--Hb_015306_020 Hb_002759_280 Hb_002759_280 Hb_002027_120--Hb_002759_280 Hb_002027_120--Hb_015306_020 Hb_011918_080 Hb_011918_080 Hb_002027_120--Hb_011918_080 Hb_007943_080 Hb_007943_080 Hb_002027_120--Hb_007943_080 Hb_002027_120--Hb_009838_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.8347 11.5387 6.58493 8.51556 27.3436 27.5812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.9612 13.0203 27.2844 18.1858 6.69154

CAGE analysis