Hb_001001_070

Information

Type -
Description -
Location Contig1001: 58459-59797
Sequence    

Annotation

kegg
ID rcu:RCOM_1591260
description hypothetical protein
nr
ID XP_012071683.1
description PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2P3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04299 PE=4 SV=1
Gene Ontology
ID GO:0042546
description PREDICTED: uncharacterized protein LOC105633663

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00219: 58742-59690
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001001_070 0.0 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
2 Hb_000251_120 0.0617916952 - - O-acetyltransferase, putative [Ricinus communis]
3 Hb_008461_060 0.0944328945 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
4 Hb_000108_180 0.0979171061 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
5 Hb_003177_040 0.1100559792 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
6 Hb_002081_020 0.1133384674 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
7 Hb_002759_030 0.1149971477 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
8 Hb_002894_080 0.1212804785 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005183_130 0.1226918267 - - glycogenin, putative [Ricinus communis]
10 Hb_001688_050 0.1231015561 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
11 Hb_000813_070 0.1252233876 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001279_400 0.1270743088 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
13 Hb_000176_080 0.1320691797 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
14 Hb_006750_010 0.1328875648 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
15 Hb_000392_540 0.1360657853 - - PREDICTED: hypersensitive-induced response protein 1 [Sesamum indicum]
16 Hb_001699_080 0.1369380899 - - unnamed protein product [Coffea canephora]
17 Hb_000094_170 0.1372564009 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
18 Hb_000030_130 0.1381015658 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
19 Hb_001289_070 0.138236835 - - PREDICTED: protein YLS9-like [Jatropha curcas]
20 Hb_158092_050 0.1409252615 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]

Gene co-expression network

sample Hb_001001_070 Hb_001001_070 Hb_000251_120 Hb_000251_120 Hb_001001_070--Hb_000251_120 Hb_008461_060 Hb_008461_060 Hb_001001_070--Hb_008461_060 Hb_000108_180 Hb_000108_180 Hb_001001_070--Hb_000108_180 Hb_003177_040 Hb_003177_040 Hb_001001_070--Hb_003177_040 Hb_002081_020 Hb_002081_020 Hb_001001_070--Hb_002081_020 Hb_002759_030 Hb_002759_030 Hb_001001_070--Hb_002759_030 Hb_000251_120--Hb_000108_180 Hb_000392_540 Hb_000392_540 Hb_000251_120--Hb_000392_540 Hb_000251_120--Hb_003177_040 Hb_000251_120--Hb_008461_060 Hb_001195_380 Hb_001195_380 Hb_000251_120--Hb_001195_380 Hb_002151_070 Hb_002151_070 Hb_008461_060--Hb_002151_070 Hb_001289_070 Hb_001289_070 Hb_008461_060--Hb_001289_070 Hb_008461_060--Hb_002081_020 Hb_158092_050 Hb_158092_050 Hb_008461_060--Hb_158092_050 Hb_000813_070 Hb_000813_070 Hb_008461_060--Hb_000813_070 Hb_000108_180--Hb_003177_040 Hb_001541_060 Hb_001541_060 Hb_000108_180--Hb_001541_060 Hb_000176_080 Hb_000176_080 Hb_000108_180--Hb_000176_080 Hb_005183_130 Hb_005183_130 Hb_000108_180--Hb_005183_130 Hb_000236_290 Hb_000236_290 Hb_003177_040--Hb_000236_290 Hb_003177_040--Hb_008461_060 Hb_001699_080 Hb_001699_080 Hb_003177_040--Hb_001699_080 Hb_015807_130 Hb_015807_130 Hb_002081_020--Hb_015807_130 Hb_002081_020--Hb_001699_080 Hb_002081_020--Hb_001289_070 Hb_001688_050 Hb_001688_050 Hb_002081_020--Hb_001688_050 Hb_005305_040 Hb_005305_040 Hb_002759_030--Hb_005305_040 Hb_001195_710 Hb_001195_710 Hb_002759_030--Hb_001195_710 Hb_014361_010 Hb_014361_010 Hb_002759_030--Hb_014361_010 Hb_000457_120 Hb_000457_120 Hb_002759_030--Hb_000457_120 Hb_000928_200 Hb_000928_200 Hb_002759_030--Hb_000928_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.55395 8.91403 11.5846 85.1652 2.04499 0.893082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84964 1.5169 0.4613 4.23919 58.4472

CAGE analysis