Hb_001001_090

Information

Type -
Description -
Location Contig1001: 72915-83788
Sequence    

Annotation

kegg
ID pop:POPTR_0014s03140g
description hypothetical protein
nr
ID XP_012071678.1
description PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L1K8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04295 PE=4 SV=1
Gene Ontology
ID GO:0003824
description transmembrane protein 53-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00223: 73209-83731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001001_090 0.0 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
2 Hb_000649_330 0.0587702847 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
3 Hb_005214_070 0.0744006927 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
4 Hb_009078_020 0.0956470719 - - PREDICTED: CDPK-related kinase 7-like [Populus euphratica]
5 Hb_011188_010 0.0971101093 - - PREDICTED: uncharacterized protein LOC105642145 isoform X1 [Jatropha curcas]
6 Hb_000015_150 0.0995583341 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
7 Hb_001663_130 0.1041439382 - - acyl-CoA thioesterase, putative [Ricinus communis]
8 Hb_001408_020 0.1072003569 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
9 Hb_000477_070 0.108422657 - - histone h2a, putative [Ricinus communis]
10 Hb_003894_060 0.1086535626 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002411_160 0.1098455865 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
12 Hb_001999_320 0.1137634371 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
13 Hb_007290_070 0.1139169481 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
14 Hb_003849_160 0.1140979625 - - PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Jatropha curcas]
15 Hb_002432_050 0.1172023016 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
16 Hb_000594_060 0.1182180781 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
17 Hb_002259_220 0.1191613953 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
18 Hb_001059_060 0.1230381264 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
19 Hb_002849_050 0.1253852492 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
20 Hb_000968_060 0.125547941 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]

Gene co-expression network

sample Hb_001001_090 Hb_001001_090 Hb_000649_330 Hb_000649_330 Hb_001001_090--Hb_000649_330 Hb_005214_070 Hb_005214_070 Hb_001001_090--Hb_005214_070 Hb_009078_020 Hb_009078_020 Hb_001001_090--Hb_009078_020 Hb_011188_010 Hb_011188_010 Hb_001001_090--Hb_011188_010 Hb_000015_150 Hb_000015_150 Hb_001001_090--Hb_000015_150 Hb_001663_130 Hb_001663_130 Hb_001001_090--Hb_001663_130 Hb_000649_330--Hb_000015_150 Hb_000649_330--Hb_009078_020 Hb_002849_050 Hb_002849_050 Hb_000649_330--Hb_002849_050 Hb_000649_330--Hb_011188_010 Hb_000649_330--Hb_005214_070 Hb_003894_060 Hb_003894_060 Hb_005214_070--Hb_003894_060 Hb_007290_070 Hb_007290_070 Hb_005214_070--Hb_007290_070 Hb_005214_070--Hb_001663_130 Hb_000748_110 Hb_000748_110 Hb_005214_070--Hb_000748_110 Hb_001059_060 Hb_001059_060 Hb_009078_020--Hb_001059_060 Hb_009078_020--Hb_011188_010 Hb_001998_210 Hb_001998_210 Hb_009078_020--Hb_001998_210 Hb_002809_160 Hb_002809_160 Hb_009078_020--Hb_002809_160 Hb_001408_020 Hb_001408_020 Hb_009078_020--Hb_001408_020 Hb_000853_330 Hb_000853_330 Hb_009078_020--Hb_000853_330 Hb_011188_010--Hb_001059_060 Hb_000300_560 Hb_000300_560 Hb_011188_010--Hb_000300_560 Hb_000477_070 Hb_000477_070 Hb_011188_010--Hb_000477_070 Hb_000594_060 Hb_000594_060 Hb_011188_010--Hb_000594_060 Hb_004577_010 Hb_004577_010 Hb_011188_010--Hb_004577_010 Hb_114943_020 Hb_114943_020 Hb_000015_150--Hb_114943_020 Hb_002463_050 Hb_002463_050 Hb_000015_150--Hb_002463_050 Hb_002411_160 Hb_002411_160 Hb_000015_150--Hb_002411_160 Hb_027043_010 Hb_027043_010 Hb_000015_150--Hb_027043_010 Hb_001663_130--Hb_000300_560 Hb_001663_130--Hb_003894_060 Hb_001160_110 Hb_001160_110 Hb_001663_130--Hb_001160_110 Hb_007594_080 Hb_007594_080 Hb_001663_130--Hb_007594_080 Hb_002447_050 Hb_002447_050 Hb_001663_130--Hb_002447_050 Hb_001663_130--Hb_011188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.54884 19.8857 36.6756 22.5805 5.81913 7.46813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.1 1.05253 1.44479 14.5279 21.3939

CAGE analysis