Hb_001001_110

Information

Type -
Description -
Location Contig1001: 89594-92235
Sequence    

Annotation

kegg
ID sot:102587892
description uncharacterized LOC102587892
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001001_110 0.0 - - -
2 Hb_013691_050 0.2328314594 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
3 Hb_001085_210 0.241526179 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
4 Hb_188487_010 0.2425131202 - - hypothetical protein JCGZ_24382 [Jatropha curcas]
5 Hb_001096_020 0.2874583119 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Populus euphratica]
6 Hb_185058_020 0.2905262009 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
7 Hb_012753_010 0.2913602572 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_004449_020 0.29367418 - - PREDICTED: ATPase 10, plasma membrane-type isoform X3 [Elaeis guineensis]
9 Hb_128531_010 0.2953271728 - - phosphoprotein phosphatase, putative [Ricinus communis]
10 Hb_155556_010 0.2972952562 - - putative methylenetetrahydrofolate reductase [Morus notabilis]
11 Hb_095835_010 0.2978828644 - - hypothetical protein JCGZ_23410 [Jatropha curcas]
12 Hb_057638_010 0.3005731356 - - PREDICTED: uncharacterized protein LOC105637008 [Jatropha curcas]
13 Hb_001188_120 0.3025211876 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
14 Hb_001780_010 0.3081389188 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
15 Hb_002047_020 0.3100408568 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
16 Hb_088410_010 0.3168890906 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_000054_110 0.3192759836 - - PREDICTED: uncharacterized protein LOC105350810 [Fragaria vesca subsp. vesca]
18 Hb_012071_010 0.3198646977 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
19 Hb_041184_010 0.3211591802 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
20 Hb_000340_050 0.3211743966 - - hypothetical protein EUGRSUZ_K033901, partial [Eucalyptus grandis]

Gene co-expression network

sample Hb_001001_110 Hb_001001_110 Hb_013691_050 Hb_013691_050 Hb_001001_110--Hb_013691_050 Hb_001085_210 Hb_001085_210 Hb_001001_110--Hb_001085_210 Hb_188487_010 Hb_188487_010 Hb_001001_110--Hb_188487_010 Hb_001096_020 Hb_001096_020 Hb_001001_110--Hb_001096_020 Hb_185058_020 Hb_185058_020 Hb_001001_110--Hb_185058_020 Hb_012753_010 Hb_012753_010 Hb_001001_110--Hb_012753_010 Hb_013691_050--Hb_001085_210 Hb_013691_050--Hb_001096_020 Hb_020437_020 Hb_020437_020 Hb_013691_050--Hb_020437_020 Hb_021854_020 Hb_021854_020 Hb_013691_050--Hb_021854_020 Hb_000032_460 Hb_000032_460 Hb_013691_050--Hb_000032_460 Hb_001085_210--Hb_185058_020 Hb_003186_040 Hb_003186_040 Hb_001085_210--Hb_003186_040 Hb_001085_210--Hb_001096_020 Hb_069147_010 Hb_069147_010 Hb_001085_210--Hb_069147_010 Hb_142570_010 Hb_142570_010 Hb_001085_210--Hb_142570_010 Hb_001780_010 Hb_001780_010 Hb_188487_010--Hb_001780_010 Hb_002774_010 Hb_002774_010 Hb_188487_010--Hb_002774_010 Hb_001524_020 Hb_001524_020 Hb_188487_010--Hb_001524_020 Hb_155556_010 Hb_155556_010 Hb_188487_010--Hb_155556_010 Hb_000920_070 Hb_000920_070 Hb_188487_010--Hb_000920_070 Hb_041184_010 Hb_041184_010 Hb_188487_010--Hb_041184_010 Hb_008033_060 Hb_008033_060 Hb_001096_020--Hb_008033_060 Hb_014324_010 Hb_014324_010 Hb_001096_020--Hb_014324_010 Hb_001096_020--Hb_021854_020 Hb_001141_040 Hb_001141_040 Hb_001096_020--Hb_001141_040 Hb_000054_110 Hb_000054_110 Hb_001096_020--Hb_000054_110 Hb_009848_050 Hb_009848_050 Hb_185058_020--Hb_009848_050 Hb_007037_010 Hb_007037_010 Hb_185058_020--Hb_007037_010 Hb_041813_050 Hb_041813_050 Hb_185058_020--Hb_041813_050 Hb_009848_060 Hb_009848_060 Hb_185058_020--Hb_009848_060 Hb_185058_020--Hb_069147_010 Hb_012753_010--Hb_000054_110 Hb_005511_090 Hb_005511_090 Hb_012753_010--Hb_005511_090 Hb_012753_010--Hb_185058_020 Hb_001188_120 Hb_001188_120 Hb_012753_010--Hb_001188_120 Hb_005731_150 Hb_005731_150 Hb_012753_010--Hb_005731_150 Hb_012753_010--Hb_021854_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.512705 0 0.0514565 0.049054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.685016 1.33329 1.13445

CAGE analysis